BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939042
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60080.1 | Symbols: | RING/U-box superfamily protein | chr3... 1417 0.0
> AT3G60080.1 | Symbols: | RING/U-box superfamily protein | chr3:22187308-22188795
FORWARD LENGTH=1488
Length=1488
Score = 1417 bits (767), Expect = 0.0
Identities = 890/947 (94%), Gaps = 18/947 (2%)
Strand=Plus/Plus
Query 1 ACCACAACCACCACTTCTCAATGTCGTCTTCCACCACCACAACAACCACCGTCCACGGCG 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ACCACCACCACCACTTCTCAATGTCGTCTTCCACCACCACAACAACCACCGTCCACGGCG 367
Query 61 AGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTA----tcc-ctcct 115
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 368 AGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTATCCCTCCTCTCCT 427
Query 116 -ctcc---tcc---tccgattcctctcctcTGTTATGTCCCCAATGCCGTCTCGATTTCC 168
|||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 428 CCTCCGATTCCGATTCCGATTCCTCTCCTCTGTTATGTCCCCAATGCCGTGTCGATTTCC 487
Query 169 TCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATT 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATT 547
Query 229 TCGAAGAAGATGATGGAGAAAACGATGACGAAGACGATGAAGAAGATTGGTGTTTCGTTG 288
| |||||| | || |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 548 TTGAAGAACAAGACGGAGAAAACGATGATGAAGACGACGAAGAAGATTGGTGTTTCGTTG 607
Query 289 ATCCAGCGGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCTTC 348
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 ATCCAGCTGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCTTC 667
Query 349 TTCGCCATCTCGCTTCCGATAATTCAGGATCGtcttcttcttcctcctcttcatcttctt 408
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 668 TTCGTCATCTCGCTTCCGATAATTCAGGATCGTCTTCTTCTTCCTCGTCTTCATCTTCTT 727
Query 409 cttcGTTGTTGAAATCTTCAGATATCGATTCGATTCCCACGATTCAGATCTCGTCTTCTA 468
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 728 CTTCGTTATTGAAATCTTCAGATATCGATTCGATCCCCACGATTCAGATCTCGTCTTCTT 787
Query 469 TGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTATGCAAAG 528
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 788 TGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTTTGCAAAG 847
Query 529 AGGATTTCGTCGTCGGAGAATCTGCTCGGAGATTACCTTGTAGCCATATATACCACTCCG 588
|||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 848 AGGATTTCATCATCGGAGAATCTGCTCGGAGATTACCGTGTAGTCATATATACCACTCCG 907
Query 589 ATTGCATCGTTCCTTGGCTATCGGATCACAACTCGTGTCCGCTTTGCCGATTTGAGCTAC 648
|||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||| |
Sbjct 908 ATTGCATCGTCCCTTGGCTCTCGGATCATAACTCGTGTCCGCTTTGTAGATTTGAGCTCC 967
Query 649 CTACGACGGCGAAGGTGGGAATTGGTGGTTCAGAGGCTGAGATGAGAATCCGATTATCGG 708
|||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 968 CTACGACGGCGAAGGTGGGAATCGGTGGCTCAGAGGCTGAGATGAGAATCAGATTATCGG 1027
Query 709 ATCTGGCTACGATTGCTGCAGACGGAGATGATGTGGAAGACGATTGGCTTGGAATAAGAA 768
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 1028 ATCTGGCTACGATTGCTGCAGATGGTGATGATGTGGAAGATGATTGGCTTGGAATCAGAA 1087
Query 769 ACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 ACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGG 1147
Query 829 AGAGGAATTTGGCTCGGACTGTTTCAGGTCTTGGAATTGGTTTGAGGAGA-G-GA-GAGA 885
|||||||||||||| |||||||||||||||||||||||||| |||| ||| | || ||||
Sbjct 1148 AGAGGAATTTGGCTAGGACTGTTTCAGGTCTTGGAATTGGTATGAGAAGAAGAGAAGAGA 1207
Query 886 TTGAATCAGAGAGAAGAAGCAACGCCACAACGACGCCGTTGTAAGAA 932
||||| |||| ||||| ||||| |||||||||||| |||||||||
Sbjct 1208 TTGAAGCAGACAGAAG---CAACGTCACAACGACGCCTTTGTAAGAA 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5