BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939043

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60090.1 | Symbols:  | VQ motif-containing protein | chr3:22...   721    0.0  


> AT3G60090.1 | Symbols:  | VQ motif-containing protein | chr3:22190858-22191331 
FORWARD LENGTH=474
Length=474

 Score =  721 bits (390),  Expect = 0.0
 Identities = 448/476 (94%), Gaps = 4/476 (1%)
 Strand=Plus/Plus

Query  28   ATGGTGAGAAATTCAATGAAAGCTGAGTACGATCTAGATCATCTTTCTCATCAAAGCTTT  87
            |||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||| ||||
Sbjct  1    ATGGTGAGAAATTCTATGAAGGCTGAGTACGATATAGATCATCTTCCTCATCAAACCTTT  60

Query  88   TATGGTGATTATTCAAAAACTTTGGTTCCCATGAACAAGAACTCCCAAATAATAACCAAG  147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TATGGTGATTATTCAAAAACTTTGGTTCCCATGAACAAGAACTCCCAAATAATAACCAAG  120

Query  148  GTCAAGCCTAAGATCCGTATCATCCATATATTTGCGCCTGAGATCATCAACACCGATGTC  207
             |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  121  ATCAAGCCTAAGATCCGTATCATCCATATATTTGCTCCCGAGATCATCAACACCGATGTC  180

Query  208  AAGAACTTCCGTACACTCGTCCAAAGTCTAACC-GGAAAGCCGGAGATCACCAAAACCGG  266
            ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct  181  AAGAACTTCCGCACACTCGTCCAAAGTCTAACCGGGAAA-CCGGAGATCACCAAAACCGG  239

Query  267  TTCTAAGAAAAAGATAACCAAAACAAGTTTTCCCGCGCCATC-TGTTCTGCCTCAAGATT  325
            ||||||||||||||||||||| |||| |||||| |||||| |  ||| ||||||||||||
Sbjct  240  TTCTAAGAAAAAGATAACCAACACAAATTTTCCTGCGCCACCGGGTT-TGCCTCAAGATT  298

Query  326  CCGGCCAAGAACATACGGCGGAGCTGGTCAGCAAAATAATAGGGAGCCATGTGGTGAAGG  385
            ||||||||||||||||||| || |||| || || ||||||||||||||| ||||||||||
Sbjct  299  CCGGCCAAGAACATACGGCTGAACTGGACAACAGAATAATAGGGAGCCACGTGGTGAAGG  358

Query  386  AAGAATGGGGATCAAGTTCGAACACAAACACTTACTTTGATTTAGATGGTTTGATCGATC  445
            ||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||
Sbjct  359  AAGAATGGGGATCAAGTTCAAACACAAATACTTACTTTGATTTTGACGGTTTGATCGATC  418

Query  446  TTGATGAAGACGACAACATATTCTCAAGTCGATGGTTTGATCTTCAACAACAATAA  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  TTGATGAAGACGACAACATATTCTCAAGTCGATGGTTTGATCTTCAACAACAATAA  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24916136912


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5