BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939046
Length=1973
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60110.1 | Symbols: | DNA-binding bromodomain-containing pr... 2813 0.0
AT2G44430.1 | Symbols: | DNA-binding bromodomain-containing pr... 274 2e-72
> AT3G60110.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr3:22197826-22201451 FORWARD LENGTH=2385
Length=2385
Score = 2813 bits (1523), Expect = 0.0
Identities = 1843/1991 (93%), Gaps = 48/1991 (2%)
Strand=Plus/Plus
Query 4 CAAACGAGCGTGTTGTTATGAAGGA-G--GAAGAAGAAGAAGCAGTGATATCGAACGGCA 60
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 151 CAAACGAGCGTATTGTTATGAAGGAGGACGAAGAAGAAGAAGCAGTGATATCGAACGGCA 210
Query 61 TGAACGACGACGACGATACTAACAATATT---AACAGTTCCAGTGAATTTGATAACAATC 117
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 211 TGAACGACGACGACGATACTAACAATATTAACAACAGTTCCACTGAATTTGATAACAATC 270
Query 118 GTATCGGAGACGGTGACGGAGACGATAACTGTAATCTGAATCAGATCAAACAAGTATGGG 177
||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 271 GTATC-G-GA----GACGGAGACGATAACAGTAATCTGAATCAGATCAAACAAGTATGGG 324
Query 178 GAACGTGGGACGAGTTGGTGTTAACATGCGCCGTTAAGCGTCATGCTTTTTCCGATTGGG 237
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 325 GAACGTGGGAGGAGTTGGTGTTAACATGCGCCGTTAAACGTCATGCTTTTTCCGATTGGG 384
Query 238 ACTCCGTCGCTAAGGAGGTTCAGGCTCGTTCCCGGAGTTCTCTCATCGTCTCCGCTGTCA 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 385 ACTCCGTCGCTAAGGAGGTTCAGGCTCGTTCCCGGAGTTCTCTCATCGTTTCCGCCGTCA 444
Query 298 ATTGCAGGCTTAAGTATCAAGATCTCAAACGTAGGTTCCAAGATTCCGTCGACGTCGGAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATTGCAGGCTTAAGTATCAAGATCTCAAACGTAGGTTCCAAGATTCCGTCGACGTCGGAG 504
Query 358 AAGAGAACAGCGAAGCGGCGACG-GCGGAGGAGGATGAAGTCGGTGAAATCCCTTGGCTC 416
| || || | |||||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct 505 ACGAAAATACCGAAGCGGCGGCGAAC-GAGGAGGATGAAGTCGGTGAAATCTCTTGGCTC 563
Query 417 GAGCAGTTACGGAGTCTTCGTGTGGCGGAGCTCCGCCGTGAGGTTCAACGATGTGACGAC 476
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 564 GAGCAGTTACGGAGTCTTCATATGGCGGAGCTCCGCCGTGAGGTTCAACGATGTGACGAC 623
Query 477 TCGATACTGTCGCTTCAGTTAAAAGTTAAGAAATTAGAGGAGGAGAAAGACGGAGATGAT 536
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 624 TCGATACTGTCGCTTCAGTTAAAAGTTAAGAAACTAGAGGAGGAGAAAGACGGAGATGAT 683
Query 537 GGAGACAATAAACCAGATCTGAAAAAGGATGAAACTAAACCGGCGAGACTTAACCGGGAA 596
|| ||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||
Sbjct 684 GGGGACAATAAACCAGATCTGAAAAACGACGAAACTAAACCGGTGAGAGTTAACCGGGAA 743
Query 597 ACGACGGAGTCTGACCGGGAGGATAATAGGTCGATGAACGAGTCCAACTCGACTGCCTCC 656
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 744 ACGACGGAGTCTGACCGGGATGATAATAGGTCGATGAACGAGTCCAACTCAACTGCCTCC 803
Query 657 GTCGATAAAATAGCCGATCACGACGGATTAGACGGAGATAAAATGGTTCAGACTGACGAG 716
||||||||||| |||||||||||| ||||||||||||||||||||||| || || |||||
Sbjct 804 GTCGATAAAATCGCCGATCACGACCGATTAGACGGAGATAAAATGGTTAAGGCTAACGAG 863
Query 717 AATTCGAGAAATCCAGATCCCGATCCGGTTAATAAGGCGGCGGCGCCGGAGGAGGAAGAA 776
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 864 AATTCGAGAAATCCAGATCCCGATCCGGTTAATAAGGCGGAGACGCCGGAGGAGGAAGAA 923
Query 777 CGCACGGTTAGTAAAAGATCGGAAATGAGTAACTCGGGCGAGTTGGATGAATCGGGAACG 836
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 924 AGAACGGTTAGTAAAAGATCGGAAATGAGTAACTCAGGCGAGTTGGATGAATCGGGAACG 983
Query 837 TCCACTGGTCCTGGAAAGAGGAAAGGACAGAAATACAGAAGCGGCGGAGGCGGCGGTGAT 896
|||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 984 TCCAATTGTCTTGGAAAGAGGAAAGGACAGAAATACAGAAGCGGCGGAGGCGGCGGTGGT 1043
Query 897 ATCAAATCGGCCGGTGATAAATCACAGCCGTTGATAGATATCATTAAGCTAATTCGGTCT 956
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1044 GTCAAATCGGCCGGCGATAAATCACAGCCGTTGATAGATATCATTAAGCTTATTCGGTCT 1103
Query 957 CATCCCCGTGGTTCCGTGTTCGAATCCCGGCTTAGGAGCCAGGAGACAAAGGATTACAAG 1016
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1104 CATCCCCGTGGTTCCGTGTTCGAATCCCGGCTTAGGAGCCAGGACACTAAGGATTACAAG 1163
Query 1017 AGGTTGATAAGGCAGCATTTGGACATCAAGACAATAGAGAAGAAGATTGAGAAAGGATCT 1076
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1164 AGGTTGATAAGGCAGCATTTGGACATGAAGACAATAGAGAAGAAGATGGAGAAAGGATCT 1223
Query 1077 TATGTTTCTTCAAGCCTTTCTTTCTACAGAGACCTCAAGCTTCTCTTCACAAACGCCATT 1136
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1224 TATGTTTCTTCAAGCCTCTCTTTTTACAGAGACCTCAAGCTTCTCTTCACAAACGCCATT 1283
Query 1137 GTCTTCTTTCCTACATCTTCCTCAGAATCCATGGCTGCTCAAGAGCTAAGAACCCTCGTC 1196
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1284 GTCTTCTTTCCTACATCTTCCTCTGAATCCATAGCTGCTCAAGAGCTAAGAACACTCGTC 1343
Query 1197 TCTAACGAGATGAAGAAACGAACGGGAAAATCTGG-TCACAATGTCATCAAAGCAGAGGC 1255
|| |||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||
Sbjct 1344 TCAAACGAGATGAAGAAACGAACGGGAAAAT-TGGGTCACTGTGTCATCAAATCAGAGGC 1402
Query 1256 TGAATCAAACG------A-ACAGAAATCCTCTGTTCTTCCTCTTGTTGCCTGTAAAAAGA 1308
|||||| || | ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1403 TGAATCTT-CGGTTTCTAGACAGAAATCCTCTGTTCTTTCTCTTGTTCCCTGTAAAAAGA 1461
Query 1309 AGAGTTCTGCTTCAAAAAAGACGCCTCCTTCA--AAT-TCTAAACAAAAAGATGAGAAGA 1365
|||| ||||||| ||||||||| ||||||| || |||| |||||||||||||||||
Sbjct 1462 AGAGCTCTGCTTTGAAAAAGACGTCTCCTTCTTCAAGCTCTAGACAAAAAGATGAGAAGA 1521
Query 1366 AATCTCAGGAAGTCTCAGAGGAGAAGACTGTGactactactactactactaGTGCAAGAA 1425
||||||||||||| || |||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1522 AATCTCAGGAAGTTTCGGAGGAGAAGATTGTGACTACTACTGCTACTACTAGTGCAAGAA 1581
Query 1426 GCTCTAGGAGAACGAGCAAAGAGATCGCTGTTGTTGCTAAAGATACTAAAACGGGAAGAG 1485
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1582 GCTCGAGGAGAACGAGCAAAGAGATTGCTGTTGTTGCTAAAGATACTAAAACGGGAAGAG 1641
Query 1486 CCAAGAATAATAATAAGAAACAAAAGGATACGAAAACAGAATCATCTGATGATGGTGATG 1545
|||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 1642 CCAAGAATAATATTAAGAAACAAACGGATACGAAAACAGAATCATCTGACGATG---ATG 1698
Query 1546 ATGATGAGAAGGAAGAGAATTCTAAAACAGAGAAGAAGACAGTAGCGATAGCAACAGATA 1605
||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1699 ATGATGAGAAGGAAGAGAATTCTAAAACAGAGAAGAAGACAGTAGCG---G-A-----TA 1749
Query 1606 AGAAGAAGAGCGTGGCTGATTTTTTGAAGAGAATAAAGAAGAACTCTCCACAGAAAGGAA 1665
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1750 AGAAGAAGAGCGTGGCTGATTTCTTGAAGAGGATAAAGAAGAACTCTCCACAGAAAGGAA 1809
Query 1666 AAGAAACAACGAGTAAAAATCAGAAGAAGAGTAATGGAAATGTTAAGAAAGAGAACGATC 1725
|||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 1810 AAGAAACAACGAGTAAAAATCAGAAGAAGAATGATGGAAACGTTAAGAAAGAGAACGATC 1869
Query 1726 TTCAGAAGAAGACCGATGGAAATGCTAAGAAAGAGAACAGTAAAGCGAAACCGAGGGAAT 1785
||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 1870 ATCAGAAGAAGAGTGATGGAAACGTTAAGAAAGAGAACAGTAAAGTGAAACCGAGGGAAT 1929
Query 1786 TGAGGAGTAACAGTACTGGTAAAAAGAAGGCTGAGGTAGAGACTGATAATAATAATAAGA 1845
||||||||| |||| ||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 1930 TGAGGAGTA---GTACGGGTAAAAAGAAGGTTGAGGTAGAGA---ATAATAATAGTAAGA 1983
Query 1846 GTTCATCGAAACGAAAACAAACTCAAGAAACAGCAGAGG---CAACGGGAAAACGAGGTA 1902
| |||||||||||||||||||| ||||||||||||||| | || |||||||||||||
Sbjct 1984 GCTCATCGAAACGAAAACAAACGAAAGAAACAGCAGAGGTGGCTACTGGAAAACGAGGTA 2043
Query 1903 GAGAATCCGGAAAAGACAATAAGCAGCCAAAGAAAAGAAGCAGAAGATGAAACTAAATTA 1962
| ||||| ||||||||| |||| ||||||| ||||||||||||||||||||||| || ||
Sbjct 2044 GGGAATCGGGAAAAGACGATAAACAGCCAAGGAAAAGAAGCAGAAGATGAAACTGAACTA 2103
Query 1963 GCCTGTGGTTA 1973
|||||||||||
Sbjct 2104 GCCTGTGGTTA 2114
> AT2G44430.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr2:18333547-18336364 FORWARD LENGTH=2196
Length=2196
Score = 274 bits (148), Expect = 2e-72
Identities = 411/530 (78%), Gaps = 49/530 (9%)
Strand=Plus/Plus
Query 723 AGAAATCCAGATCCCGATCCGGTTAATAAGGC-G-G-CGGC-GCCGGAGGAGGAAGAACG 778
|||| ||| ||||| ||||||||||| |||| | | |||| || ||||||||| ||| |
Sbjct 793 AGAA-TCCGGATCCTGATCCGGTTAACAAGGATGCGACGGCTGC-GGAGGAGGAGGAAGG 850
Query 779 CA-CGGTTAGTAAAAGATCGGAAATGAGTAACTCGGGCGAGTT-GGATGAATC-GGGAAC 835
| ||||||||| | |||||||| |||| |||| | |||||| || || || |||| |
Sbjct 851 -ATCGGTTAGTAGAGGATCGGAAGCGAGTCACTCAGACGAGTTAGGC-GAGTCAGGGA-C 907
Query 836 GTCC-ACTGGTCC-TGGAAAGAGGAAAGGACAGAAATACAGAAGCGGCGGAGGCGGCGGT 893
|| | | | |||||| ||||| || || || |||| | | || | |||||
Sbjct 908 ATCGGAAAG-TAAATGGAAAC-GGAAACGA-AGGAA-ACAG--G-GT-GGTGCCGGCGA- 958
Query 894 GATATCAAATCGGCCG-GTGATAAATCACAGCCGTTGAT-AGATAT-CATTAAGCTAATT 950
||| || |||||| | | | |||||||||||||||||| || | | | || | || |||
Sbjct 959 GAT--CAGATCGGCTGAGAG-TAAATCACAGCCGTTGATTAG-TCTTC-TTGATCTGATT 1013
Query 951 CGGTCTCATCCCCGTGGTTCCGTGTTCGAATC-CCGGCTTAGGAGCCAGGAGACAAAGGA 1009
||||| ||||| ||||| || |||||||| | ||||||| ||||||||||| | |||||
Sbjct 1014 CGGTCCCATCCGCGTGGATCTTTGTTCGAA-CGCCGGCTTCGGAGCCAGGAGGCTAAGGA 1072
Query 1010 TTACAAGAGGTTGAT-AAGGCAGCATTTGGACATCAAGACAATAGAGAAGAA-GATTGA- 1066
||||||||| || | ||| || ||||||||||| |||||||| ||| ||| | ||||
Sbjct 1073 TTACAAGAGCATGGTTAAG-CAACATTTGGACATTGAGACAATACAGA-GAAAG-TTGAA 1129
Query 1067 GAAAGGATCTTATGTTTCTTCAAGCCT--TTCTTTCTACAGAGACCT-CAAGCTTCTCTT 1123
| |||||||||||| |||||||||||| || ||| |||||||| || || |||||||||
Sbjct 1130 GCAAGGATCTTATGATTCTTCAAGCCTCATT-TTT-TACAGAGATCTACA-GCTTCTCTT 1186
Query 1124 CACAAACGCCATTGTCTTCTTTCCTACATCTTCCTCAGAATCCATGGCTGCTCAAGAGCT 1183
||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| || ||
Sbjct 1187 CACAAACGCAATTGTCTTCTTTCCTTTATCTTCCTCAGAATCGATGGCAGCTCACGAACT 1246
Query 1184 AAGAACCCTCGTCTCT-AACGAGATGAAGAAACGA-ACGGGAAAATCTGG 1231
| || | | || ||| || || |||| |||| || || |||||| ||||
Sbjct 1247 ACGAGCTGTTGTTTCTCAA-GAAATGA-GAAAAGAGACCGGAAAAGCTGG 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97740461115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5