BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939057

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60238.1 | Symbols:  | Unknown gene | chr3:22259085-22259844...   231    2e-60


> AT3G60238.1 | Symbols:  | Unknown gene | chr3:22259085-22259844 
REVERSE LENGTH=679
Length=679

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 160/176 (91%), Gaps = 6/176 (3%)
 Strand=Plus/Minus

Query  134  CAGAGGGGACATGGCATTCTGTAGCCAAGAGTGTAGGCAAGAACAGATTGAGTCTGATGA  193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  173  CAGAGGGGACATGGCATTCTGTAGCCAAGAGTGTAGGCAAGAACAGATTGAGTCTGATGA  114

Query  194  AAC-TAAATCCAAGAGGTGGAGAAAAACGTC-ATCCTCCAGATCATCATCTCTCCGGAAA  251
            ||| ||| ||||||||||||||||||||||| ||  |||||||||| |||||||||||||
Sbjct  113  AACATAA-TCCAAGAGGTGGAGAAAAACGTCGATT-TCCAGATCATAATCTCTCCGGAAA  56

Query  252  TCTTCC-GATTCGAAAGATTCCGCCGCCGGCGAAACCGTACGGACAAAGACTCTTG  306
            ||  || ||||||||| |||||| ||||  | |||| |||||||| ||||||||||
Sbjct  55   TCG-CCTGATTCGAAATATTCCGTCGCCATCAAAACTGTACGGACGAAGACTCTTG  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15784073186


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5