BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939059

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60245.1 | Symbols:  | Zinc-binding ribosomal protein family...   492    9e-139


> AT3G60245.1 | Symbols:  | Zinc-binding ribosomal protein family 
protein | chr3:22268746-22270006 FORWARD LENGTH=592
Length=592

 Score =  492 bits (266),  Expect = 9e-139
 Identities = 303/321 (94%), Gaps = 2/321 (1%)
 Strand=Plus/Plus

Query  4    CCTCCTGCTTGCTCTGAAAAATGGCGAAGAGAACGAAGAAGGTTGGAATCGTCGGCAAAT  63
            |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38   CCTCCTTCCTGCTCTGAAAAATGGCGAAGAGAACGAAGAAGGTTGGAATCGTCGGCAAAT  97

Query  64   ACGGAACACGTTATGGTGCCAGTATCAGGAAGCAGATTAAGAAGATGGAGGTCAGTCAGC  123
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  98   ACGGAACACGTTATGGTGCGAGTATCAGGAAGCAGATTAAGAAGATGGAGGTCAGCCAGC  157

Query  124  ACAGCAAATACTTCTGTGAGTTCTGCGGCAAGTACGGCGTGAAGCGAAAGGCTGTTGGTA  183
            ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  158  ACAGCAAGTACTTCTGTGAGTTCTGTGGCAAGTACGGAGTGAAGCGAAAGGCTGTTGGTA  217

Query  184  TTTGGGGATGCAAGGATTGTGGCAAGGTCAAGGCTGGTGGTGCTTACACAATGAACACCG  243
            | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  218  TCTGGGGTTGCAAGGATTGTGGCAAGGTCAAGGCAGGTGGTGCTTACACAATGAACACCG  277

Query  244  CCAGTGCTGTCACCGTAAGAAGCACAATCAGGAGGTTGAGGGAGCAGATCGAGGGTTAA-  302
            ||||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||| 
Sbjct  278  CCAGTGCGGTCACTGTTAGAAGCACGATCAGAAGGTTGAGGGAGCAGATCGAGGGTTAAA  337

Query  303  -GTCTGCTCGCTTTTTATATT  322
             ||||||| ||||||||||||
Sbjct  338  AGTCTGCTGGCTTTTTATATT  358



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5