BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939073
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60380.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3112 0.0
> AT3G60380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: hydroxyproline-rich glycoprotein family
protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins
in 424 species: Archae - 6; Bacteria - 372; Metazoa
- 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes
- 2147 (source: NCBI BLink). | chr3:22316913-22319266
REVERSE LENGTH=2354
Length=2354
Score = 3112 bits (1685), Expect = 0.0
Identities = 2073/2255 (92%), Gaps = 48/2255 (2%)
Strand=Plus/Plus
Query 20 CAATGGCGTCTCCCAATCCCTACACCAAGCGTCGCTCTCCGCCTAATGTCGTCGTACCGC 79
||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||| |
Sbjct 121 CAATGGCGTCTCCAAATCCCTACACCAAGCGCCGCTCTCCGCCGAATGTCGTTGTA---C 177
Query 80 CGTCTACACAGCCTCGGTCTAAATCC--A-CCGGAGGAGGATTTTTCTGTAAGTCTGTTC 136
|| | |||||||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 178 CG-C--CACAGCCTCGGTATAAATCCATAGGAGGAGGAGGATTTTTCTGTAAGTCTGTTC 234
Query 137 TGTTCGCTCTCTTTCTCTTCGCCTTGCCGTTGTTCCCTTCTCAAGCTCCTGATTTCGTCG 196
| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TATTCGCTCTTTTTCTCCTCGCCTTGCCGTTGTTCCCTTCTCAAGCTCCTGATTTCGTCG 294
Query 197 GTGAGACTGTGCTCACCAAGTTCTGGGAACTGATTCACCTCCTATTCGTCGGCATTGCTG 256
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 295 GTGAGACTGTGCTCACTAAGTTCTGGGAACTGATTCATCTCCTATTCGTCGGCATTGCTG 354
Query 257 TTGCTTACGGTTTGTTTAGCCGTAGGAATGTTGAATCCGGTGTTGATTTAAGGATGAATC 316
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 355 TTGCTTATGGTTTGTTTAGCCGTAGGAATGTTGAATCCGCTGTTGATTTAAGGATGACTC 414
Query 317 GTGTAGATGAGTCTTCTTTGTCTTATGTATCTAGGATCTTTCAGGTTTCTTCTGTTTTTG 376
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 415 GTGTAGATGAGTCTTCTTTGTCTTATGTATCTAGAATCTTCCAGGTTTCTTCTGTTTTTG 474
Query 377 ACGAAGAGTTTGATGAGAATTCTTGTGAGTTTGTTGATGTGAGGA--G-TGAGAGTGTGA 433
|||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct 475 ACGAAGAGTTTGATGATAATTCTTGTGAGTTTGTTGATGTGAGGAGTGATGAGAGTGTGA 534
Query 434 GTGCTCGAGCTTCTGTTGTGGGGAAATCTGAGTCTTTTGTTGTTGAAA---GTGAATTGG 490
|||||||||||||||| || |||||||||||||||||||||||||||| | |||||||
Sbjct 535 GTGCTCGAGCTTCTGTGGTTGGGAAATCTGAGTCTTTTGTTGTTGAAAGCGGCGAATTGG 594
Query 491 AAGAATCGTCTGAATTTGGTGAAACTAATGAAGTCCGAGCTTGGAATTCGCAGTATTTTC 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 595 AAGAATCGTCTGAATTTGGTGAAACTAATGAAGTCCGAGCTTGGAATTCGCAGTATTTCC 654
Query 551 AGGGGAAATCTAAGGTTGTGGTTGCTCGACCAGCTTATGGTCTTGATGGTCATGTTCTGC 610
|||| || ||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 655 AGGGTAAGTCTAAGGTTGTGGTTGCTCGACCTGCTTATGGTCTTGATGGTCACGTTGTGC 714
Query 611 ATCAGCCGTTAGGCTTGCCGATTAGGAGTTTAAGGTCAGCTTTGAGAGATAATGCTGCTC 670
||||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 715 ATCAGCCATTAGGCTTGCCTATTAGGAGGTTAAGGTCATCTTTGAGAGATAATGCTGCTC 774
Query 671 CTCAAGATACCTCTTTTACTGATAACTGTGATGGAGCTGTTAACGGGGAAGCTGAGTCAT 730
|||||| | |||||| |||||| |||||||||||||||||| | ||||||||||||||
Sbjct 775 TTCAAGACAAATCTTTTGCTGATAGCTGTGATGGAGCTGTTAATGCGGAAGCTGAGTCAT 834
Query 731 TATTGGC------------TGATGAGGTCTTGGCTGATCCGGCTTCACCTGCTCCATGGC 778
||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 835 TATTGGCTGATAATTTTTTTGATGAGGTCTTGGCTGCTCCGGCTTCACCTGTTCCATGGC 894
Query 779 AATCTAGACCTGAAATGATGGGAATGGGAGACAACTATCCTTCAAATTTCCAGCCTCTAT 838
|| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 895 AAGCTAGACCTGAAATGATGGGAATCGGTGACAACTATCCTTCAAATTTCCAGCCTATAT 954
Query 839 CTGTGGATGAAACCCAGTTTGCTACTCTTAAATCCACATCTTCTCGGTCTAGTGCTTCTT 898
||||||||| || | | | |||||||| | |||||||||||||| || |||||
Sbjct 955 CTGTGGATG-AA---A-----C--C-CTTAAATCGATATCTTCTCGGTCTACTGGTTCTT 1002
Query 899 CTTCATCTCAAACTAGTTTTGCATCCCATATTCAGAACAGATTCTCGCCTTCTCGATCTG 958
|||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||
Sbjct 1003 CTTCATCTCAAACTAGTTATGCATCCCAGAATCAGAACAGATTCTCTCCTTCTCGATCTG 1062
Query 959 TTTCTGCAGAGTCACTAAACTCAAATGTGGAAGAGTTGGTCAAGGAAAAGAGTCTTCAGG 1018
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1063 TTTCCGCAGAGTCACTAAACTCAAATGTGGAAGAGTTGGTCAAGGAGAAGAGTCGCCAGA 1122
Query 1019 GTTCATCACGGTCTAGTTCGCCATCCTTGCCCCCATCACCTTCACTGTCTCCATCTCCAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 GTTCATCACGGTCTAGTTCGCCATCCTTGCCCCCATCACCTTCACTGTCTCCATCTCCAC 1182
Query 1079 CATCGCCAGAACTAGTGATCGAGGATACTCACAGGCGTTTGCCAGAATTAGTAACCGATG 1138
||||||||||| ||||| | | ||||||| ||| |||| ||||||||||||||||||||
Sbjct 1183 CATCGCCAGAATTAGTGCCCAATGATACTCGCAGACGTTCGCCAGAATTAGTAACCGATG 1242
Query 1139 ATACTCACAGGCGTGCCTCACATTCTCGGCATTACAGTGATGGTTCCTTGTTAGAGGAAG 1198
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1243 ATACTCCCAGGCGTGCGTCACATTCTCGGCATTATAGTGATGGTTCCTTGTTAGAGGAAG 1302
Query 1199 ATGTAAGGCGGGGGTTTGAAAATGAGTTGGAGGGGAGTAAAGTCAGAGGCAGAAAAACAG 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1303 ATGTAAGGCGGGGGTTTGAAAATGAGTTGGAGGGGAGTAAAGTCAGAGGCAGAAAAGCAG 1362
Query 1259 AATCCTTCAGCAAAAAGGAACGGGGATCTAAATCGCTTAATTTGGCAGCTGAAAGTTCCC 1318
||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1363 AATTCTTCAGTAAGAAGGAACGGGGATCTAAATCACTTAATTTGGCAGCTGAAAGTTCCC 1422
Query 1319 GGAGAGGGAACAAGTCTCGGAGATCCTATCCTCCTGAGTCCATCTCATCTCCCATTGGTG 1378
||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 1423 GGAGAGGGAACAAGTCTCGCAGATCCTATCCTCCTGAGTCTATCTCATCTCCCGTTGGTG 1482
Query 1379 GTGCTGATGACTCCACAACTAGAAGACGGGATCTTCAGCAAAAGAGTGAT-GTCCATTTG 1437
||||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct 1483 GTGCTGATGACTCCACAACTAGAAGACAAGATCTTCAGCAAAAGAGTAATTGTC-ATTTG 1541
Query 1438 CTTGAAGACAATATCGGGAAAGGACAGGAAGCTGACCATAACAATCTTAGGGTCAAAAAG 1497
|||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1542 CTTGAAGAAAATATCAGGAAAGGAGTGGAAGCTGACCATAACAATCTGAGGGTCAAAAAG 1601
Query 1498 GGAAGGAGTCAAGACTCTCTGGAGCTAACAGCAGAAGACTCTGCAAAAGATGAGAAGTTC 1557
||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1602 GGAAGGAGTCACGACTCTTTGGAGCTAACAGCAGAAGATTCTGCAAAAGATGAGAAGGTC 1661
Query 1558 AGTGAATCTTTTCCTGCTCTTGATGTAGTGTTCCAGCCAACAAATACTAAAGCTTCAAGG 1617
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1662 AGTGAATCTTTTCCTGCTCTTGATGTAGTGTTCCAACCAACAAATGCTAAAGCTTCAAGG 1721
Query 1618 CGTGCAATGCATTCTTCACAAGGGGGACGTGACACTTTTCCGGAGAA--A-GCTGTCACA 1674
|| || |||| |||||||| |||||||||||||||||| |||||||| | | ||||||
Sbjct 1722 CGCGCCATGCGTTCTTCACGAGGGGGACGTGACACTTTGCCGGAGAAGGATGTTGTCACC 1781
Query 1675 AGAAACTTAGAGGATGACTCTGAGGATTACA-ATAAGTCCAGGAAAAAGGACCTTCCTGG 1733
||||| |||||||||||| ||| ||||| | ||||||||||||||||||||||||||||
Sbjct 1782 AGAAAATTAGAGGATGACACTGTGGATT-CGGATAAGTCCAGGAAAAAGGACCTTCCTGG 1840
Query 1734 TAATGATAAGGAAGTGAAATCAAACAGTCCAAGACTTGAACTGCGTTCTTGGAGAGCTTC 1793
||| || |||||| |||||| | || |||||||| |||||| |||||||||||||||||
Sbjct 1841 TAAAGACAAGGAAATGAAATTAGACGGTCCAAGAATTGAACCACGTTCTTGGAGAGCTTC 1900
Query 1794 CAGTAATGTATCA-TCGAGAGCAAAGTCCGTGAGGACCATAAGATCTGATCGTCATGGGA 1852
||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1901 CAGTAATGTATCACT-GAGAGGAAAGTCCGTGAGGACCATAAGATCTGATCGTCATGGGA 1959
Query 1853 AAGGTTTAAAGACAGATGGAGATTCATGTGAAGACCGGACAGAAGCTAAAGTAGAAAGCC 1912
||| | ||||||||||||||||||||| ||| || ||| |||||||||||||||||||||
Sbjct 1960 AAGATGTAAAGACAGATGGAGATTCATCTGAGGATCGGGCAGAAGCTAAAGTAGAAAGCC 2019
Query 1913 GAGGAAGTACGAAATCAAGAAGACAACGACAAGAAGAACTATCTATTGTACTACACCAGG 1972
||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 2020 GAGGAAGAACGAAATCGAGAAGACCACGACAAGAAGAACTATCGATTGTACTACACCAGG 2079
Query 1973 AGAAAAGTTCAGAAACTCGCGCTAAATCCGAGCCAGAAGAGGTTGCTATGGAAGAGCCCG 2032
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2080 AGAAAAGTTCAGAAACTCGCGCTAAATCCGAGCCAGAAGAGGTTGCTATGGAAGAGCCCC 2139
Query 2033 AGGCCGAGCAGCAACCTCAAGTAACTTTGGAAGAGGAAGAAGAAGCTGATTGGGAAAGCC 2092
||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||
Sbjct 2140 AGGCCGAGCAGCAACCTGAAGTAACTTTCGAAGAGGAGGAAGAAGCTGCTTGGGAAAGCC 2199
Query 2093 AAAGCAATGCAAGCCATGACCATAATGAGGTTGATAGAAAAGCCGGTGAGTTCATAGCTA 2152
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2200 AAAGCAATGCAAGCCATGATCATAATGAGGTTGATAGAAAAGCCGGTGAGTTCATAGCCA 2259
Query 2153 AATTCCGGGAACAAATTCGGTTACAGAAACTCATATCGGGTGAACAACCTAGAGGAGGAG 2212
||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 2260 AATTCCGAGAACAAATTAGGTTGCAGAAACTCATATCCGGTGAACAACCTAGAGGAGGAG 2319
Query 2213 GCACTGGTATTTTCAGAAACAGTCAATTCAGATGA 2247
|||||||||||||||||||||| ||||||||||||
Sbjct 2320 GCACTGGTATTTTCAGAAACAGCCAATTCAGATGA 2354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112499421345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5