BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939075
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60400.1 | Symbols: | Mitochondrial transcription terminati... 2671 0.0
> AT3G60400.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr3:22329092-22331103 FORWARD
LENGTH=2012
Length=2012
Score = 2671 bits (1446), Expect = 0.0
Identities = 1621/1707 (95%), Gaps = 6/1707 (0%)
Strand=Plus/Plus
Query 25 CATGTTCATGGTTCGATTGAAATTCGCATCGATCTTTCATAATTTCAGTACGGTGGCGGC 84
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CATGTTCATGGTTCGATTGAAATTCGCATCGATCTCTCATAATTTCAGTACGGTGGCGGC 60
Query 85 GAAACATAGAAGAGTACCGTCCAAGTACAAGTCTCTAGCCATCGGAAAAGCCCAGCAAGC 144
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 61 GAAACATAGAAGAGTGCCGTCGAAATACAAGTCTCTAGCCATCGGAAAAGCCCAGCAAGC 120
Query 145 CATTACAGACTATCTCCACACCACCAGGTCTCTCTCCTACACTCACGCCGAACAGATTGC 204
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 121 CATTACAGACTATCTCCACACCACCAGGTCTCTCTCCTACACTCACGCTGAACAAATTGC 180
Query 205 CTCAAACGCCTCCGTTTCGATTCGAAATCTCATCCTGAAGCTTGATTTCTCTGTTCCTAC 264
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 181 CTCAAACGCCTCCGTTTCGATTCGAAACCTCATCCTGAAACTCGATTTCTCTGTTCCTAC 240
Query 265 CTTCTCCAAATCGCTTCGGAAGCATCTCAGTTACCACCCAATTAACGAATTCGAGTTTTT 324
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 241 CTTCTCCAAATCTCTTCGGAAGCATCTCAGTTACCATCCTATTAACGAATTCGAGTTTTT 300
Query 325 CTTCGAGAGCATTGGCATTGATTACAGCGAGGTTTGTGAGTTTTTGCCTGAGAAGAAATT 384
||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||
Sbjct 301 CTTCGAGAGCATTGGCATTGACTACAGTGAGGTTAGCGAGTTTTTGCCTGAGAAGAAATT 360
Query 385 CTTCTTCTCTGAGGATCGGACTGTGTTGGATGCAGCTTGTGCGTTATCTGGATTTGGGTT 444
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 361 CTTCTTCTCTGAGGATCGGACTGTGTTGGATGCAGCTTTTGCTTTATCTGGATTTGGGTT 420
Query 445 TCCTTGGAACAAGCTTGGTAAGTTGTATAAAGAGGAAAGGTTGGTTTTTGTGCAGAGTCC 504
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 TCCTTGGAATAAGCTTGGTAAGTTGTATAAAGAGGAAAGGTTGGTTTTTGTGCAGCGTCC 480
Query 505 TGGAGAGATTGATTCCAGGCTGCTTAAGTTTAAAGATTTAGGATTCAGTACAGTCGCGGT 564
|||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 481 TGGAGAAATTGAATCCAGGCTACTTAAGTTTAAAGATATAGGATTCAGTACAGTTGCGGT 540
Query 565 GATTGGTACTTGTTTAGCGTTTCCTCGTACTCTATGTGGAGGTGGAGAAGTGGGTTCGGA 624
||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 541 GATTGGTACTTGTTTAGCGATTCCTCGTACTCTCTGTGGAGGTGGTGAATTGGGTTCGGA 600
Query 625 GCTACTTTGTTTGTTTGTTAAGCTGAAGAGACTTTTTGATGAATTTGATTCACAACATCT 684
| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 601 GATACGTTGTTTGTTTGTTAAGCTGAAAAGACTTTTTGATGAGTTTGATTCACATCATCT 660
Query 685 TTTTGAAGAAAATGTGGATTCTTGGCAGGCCATTAGCATGAAGATTAGGATCTTTTACGA 744
|||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct 661 TTTTGAAGAAAATGTGGATTCTTGGCTCGCCGTTAGCAGGAAGATTAGGATCTTTTACGA 720
Query 745 TTTGGGTTGTGAGAATGAAGAGATGTGGGAGTTGATGGGTAGAAACAAATCACTTTTTCT 804
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 721 TTTGGGTTGTGAGAATGAAGAGATGTGGGAGTTGATGTGTAGAAATAAGTCACTTTTTCT 780
Query 805 GGAATATTCTGAAGAAGCTCTGATGAAAAAGGC-GGAATATTTTTGTCGGTTTGGTGTTA 863
||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||
Sbjct 781 GGAATATTCTGAAGAAGCTCTGATGAATAAGGCTGG-ATATTTTTGTAGGTTTGGTGTTA 839
Query 864 GGAAAGAAGATGTTGCTCTTTTGATTCTTCGAAATCCCGCTATTATGAATTTTGATCTAG 923
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCAAAGAAGATGCTGCTCTTTTGATTCTTCGAAATCCCGCTATTATGAATTTTGATCTAG 899
Query 924 AGAAACCAGTGATCTCTGTTACAGGAATGCTTAAGCATTTTGGATTGAGACAGGATGAAG 983
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 AGAAACCGGTGATCTCTGTTACAGGAATGCTAAAGCATTTTGGATTGAGACAGGATGAAG 959
Query 984 TGGATGCTGTTGCTCAGAAGTACCCGTATGTTTTGGGTAGAAACAAATTGAAGAATCTGC 1043
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 960 TGGATGCTGTTGCTCAGAAGTACCCGTATGTTTTTGGTAGAAACCAATTGAAGAATCTGC 1019
Query 1044 CTTATGTGCTTAGAGCAATAGATTTACATGAGAGGATCTTTGATATATTGAAGAATGGGA 1103
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1020 CTTATGTGCTTAGAGCAATAGATTTGCATGAAAGGATCTTTGATATATTGAAGAATGGGA 1079
Query 1104 GCCATCATTTACTCGCTAGCTATTCGGTT-ATGGATCCTGATGAAGACTTAGACAGAGAG 1162
|||||||||||||||||||||| | || |||||||| |||||||||||||| ||||||
Sbjct 1080 ACCATCATTTACTCGCTAGCTATAC-CTTGATGGATCCCGATGAAGACTTAGAGAGAGAG 1138
Query 1163 TATCAAGAAGGCTTGGAGGAGCTTCAAAACTCAAGAACCAAAACACACAATATTCAAAAA 1222
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1139 TATCAAGAAGGCTTGGAGGAGCTTCAAAACTCAAGAACCAAAAGACACAACATTCAAAAG 1198
Query 1223 CTGGATTTCCTTCATGAAATAGGGTTTGGCGAAAACGGCATGACTATGAAGGTACTACAA 1282
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1199 TTGGATTTCCTTCATGAAATAGGGTTTGGCGAAAACGGCATCACCATGAAGGTACTACAA 1258
Query 1283 CATGTCCATGGTACGGCCGTAGAACTACAAGACCGATTCCAAATCTTACTAGACAGTGGC 1342
||||| ||||||||||| |||||||| || ||||||||||||||||||||| ||||||||
Sbjct 1259 CATGTACATGGTACGGCGGTAGAACTCCACGACCGATTCCAAATCTTACTAAACAGTGGC 1318
Query 1343 ATCATTTTCTCAAAGATATGCTTGTTGATAAGATCAGCACCAAAGATCTTGAACCAGAAA 1402
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1319 ATCATTTTCTCAAAGATATGCATGTTGATAAGATCAGCACCAAAGATCTTGAATCAGAAA 1378
Query 1403 CCACATAGCATACAAGATAAGCTAAGGTTCCTCTGTGGCGAGATGGGAGATTCTTTGGAC 1462
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CCACATAGCATACAAGATAAACTAAGGTTCCTCTGTGGCGAGATGGGAGATTCTTTGGAT 1438
Query 1463 TACCTAGATGTTTTCCCAGCTTATCTTTGTTTTGACCTGGAGAACAGAATCAGTCCAAGG 1522
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TACCTAGAGGTTTTCCCAGCTTATCTTTGTTTTGACCTGGAGAACAGAATCAGTCCAAGG 1498
Query 1523 TTTAGATTCCATAAGTGGCTTGTGGAGAAAGGGTTGAGCGAGAAAAGCTATTCAATCGCA 1582
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1499 TTTAGATTCCATAAGTGGCTTGTGGAGAAAGGGTTTAGCGAGAAAAGCTATTCAATCGCA 1558
Query 1583 AGCATTGTAGCTACGAGCGAAAAGGCCTTCATAGCTCGTCTATATGGGATTCATCCAGCA 1642
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1559 AGCATTGTAGCTACAAGCGAAAAGGCCTTCATAGCTCGTCTATATGGGATTCATCCTGCA 1618
Query 1643 ATCCCGAAACATTGGTTTGAACGCTTCGCCAACAGAAAAACCAGAGCCACTGTAATCCTA 1702
||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||| |||||
Sbjct 1619 ATCCCGAAACATTGGTTCGAACGCTTCTCCAGCAGAAAAACCAGAGACACTGTA-TCCTA 1677
Query 1703 AACTGAATAAAAAGACTCTTTGGATCT 1729
| ||||| |||||||||||||||||||
Sbjct 1678 A-CTGAACAAAAAGACTCTTTGGATCT 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85491528135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5