BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939077
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60420.2 | Symbols: | Phosphoglycerate mutase family protei... 1007 0.0
> AT3G60420.2 | Symbols: | Phosphoglycerate mutase family protein
| chr3:22334431-22337494 FORWARD LENGTH=1232
Length=1232
Score = 1007 bits (545), Expect = 0.0
Identities = 599/626 (96%), Gaps = 0/626 (0%)
Strand=Plus/Plus
Query 6 ACACAGAGAAAGGCAATGGAGTCGGCTAAATCAAACATCCATGGCCACCAAAATGTCATC 65
|||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1 ACACCGAGAAAGGCAATGGAGTCGGCTAAATCAATCATCGGTGGCCACCAAAATGTCATC 60
Query 66 GTGATGCGTCATGGTGATCGACTCGACAATTTCGAGCCACTCTGGACTTCAACAGCTGCG 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGATGCGTCATGGTGATCGACTCGACAATTTCGAGCCACTCTGGACTTCAACAGCTGCG 120
Query 126 AGACCGTGGGATCCACCGCTTGCTCAGGACGGTAAGAACCGGGCCTTTAGAAATGGTCAG 185
|||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||
Sbjct 121 AGACCGTGGGATCCACCGCTTGCTCAAGACGGTAAGGATCGGGCCTTTAGAACTGGTCAG 180
Query 186 AGAATCCGGTCTCAGCTTGGGTTTCCGATTCACCGTGTATTCGTCTCCCCTTTCCTCCGC 245
|||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 181 AGAATCCGGTCTCAACTTGGGGTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGC 240
Query 246 TGCATCCAGACCGCTTCTGAAGTCGTTGCCGCTCTCTCAGCCGTTGATTTTGATCCCAAT 305
||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||| |
Sbjct 241 TGCATCCAGACCGCTTCCGAAGTCGTTGCCGCCCTCTCAGCCGTCGATTTCGATCCCATT 300
Query 306 GCTGTGTCTTCTAGAGACGTCCTTTCCATCGACAATACAAAGATCAAGGTAGCTATTGAA 365
||| |||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 301 GCTATGTCATCTAAAGACGTGCTTTCCATCGACAATACTAAGATCAAGGTGGCTATTGAA 360
Query 366 TTTGGATTGTCCGAGATACCGAACCCAATCTTTATTAAGAGTGAAGTTGCTCCCAAAGAT 425
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTGGATTGTCCGAGATACCGCACCCAATCTTTATTAAGAGTGAAGTTGCTCCCAAAGAT 420
Query 426 GGGAAATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGAT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGGAAATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGAT 480
Query 486 TCTAATGTGGATATGATTTATAAAGAGGTGCCAGAATGGGGAGAGTCTGCACAAGCCTTT 545
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCTAATGTGGATATGGTTTATAAAGAGGTGCCAGAATGGGGAGAATCTGCACAAGCCTTT 540
Query 546 GAGGATCGATATTATAAGACAGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAACTTG 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGGATCGATATTATAAGACAGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAACTTG 600
Query 606 CTCTTGGTCACTCATTGGGGAGCAGT 631
||||| ||||||||||||||||||||
Sbjct 601 CTCTTAGTCACTCATTGGGGAGCAGT 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42246917627
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5