BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939078
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50050.1 | Symbols: | Eukaryotic aspartyl protease family p... 662 0.0
> AT3G50050.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:18553984-18557209 REVERSE LENGTH=2147
Length=2147
Score = 662 bits (358), Expect = 0.0
Identities = 406/430 (94%), Gaps = 0/430 (0%)
Strand=Plus/Plus
Query 503 AGGACCCAAAATTTCAGCCAGAATTGTCTAGCACTTATCAACCTGTGAAGTGTAACATGG 562
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 486 AGGACCCAAAATTTCAGCCAGAAATGTCTAGCACTTATCAACCTGTTAAGTGTAACATGG 545
Query 563 ACTGTAATTGTGATGATGATAAAGAACAATGTGTTTATGAGAGAGAGTATGCGGAACATA 622
| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 546 ATTGTAATTGTGATGATGATAGAGAACAATGTGTTTACGAGAGAGAGTATGCTGAACATA 605
Query 623 GTAGTAGTAAAGGTGTGCTTGGAGAAGATCTTATTTCATTTGGCAATGAAAGCCACCTGA 682
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 606 GTAGTAGTAAAGGTGTTCTTGGAGAAGATCTTATTTCATTTGGCAATGAAAGCCAGCTAA 665
Query 683 CACCTCAACGAGCTGTTTTCGGTTGCAAAACTGTTGAAACCGGTGATCTTTATAGTCAAC 742
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 666 CACCTCAACGAGCTGTTTTCGGTTGTGAAACTGTTGAAACCGGTGATCTTTATAGTCAAC 725
Query 743 GTGCTGATGGAATTATTGGATTAGGTCAAGGGGACCTTAGTCTTGTGGGTCAGTTGGTGG 802
|||||||||| |||||||||||||||||||| || ||||||||||| | ||| |||||||
Sbjct 726 GTGCTGATGGGATTATTGGATTAGGTCAAGGAGATCTTAGTCTTGTTGATCAATTGGTGG 785
Query 803 ATAAAGGTTTGATAAGCAACTCTTTTGGTTTGTGTTATGGAGGGTTGGATGTTGGTGGAG 862
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 786 ATAAAGGTTTGATAAGCAACTCTTTTGGTTTGTGTTATGGAGGGATGGATGTTGGTGGTG 845
Query 863 GTTCGATGATTGTTGGCGGTTTTGATTATCCATCTGATATGATATTCACGGACTCAGACC 922
||||||||||| ||||||||||||||||||||||||||||| | || |||||||| ||||
Sbjct 846 GTTCGATGATTCTTGGCGGTTTTGATTATCCATCTGATATGGTGTTTACGGACTCGGACC 905
Query 923 CTGATCGTAG 932
||||||||||
Sbjct 906 CTGATCGTAG 915
Score = 658 bits (356), Expect = 0.0
Identities = 399/419 (95%), Gaps = 5/419 (1%)
Strand=Plus/Plus
Query 1 TCGGAAAATTCAACCGGAGATCAAATGGCATTGTCGTCGATCTCATCAATCGGCGCTACA 60
||| ||||| |||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 71 TCGAAAAATCCAACCGGAGATCAAATGGCACTGCCGTCGATCTCATCAATCGGCGCGAC- 129
Query 61 G-TCTCAATCCTAATCTATTTCTCTCTTCCTTATTCAATCACAGCTGGTGAAAACAA--- 116
| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 130 GTTCTCACTCCTAATCTATTTATCTCTTCCTTATTCAATCACAGCTGGTGAAAACAACCT 189
Query 117 CCTCCACCAATCTCCCGCCGCTAGATCTCGACGTCCCATGGTGTTCCCATTGTTTCTCTC 176
||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 190 CCTCCACCAATCTCCAACCGCTAGATCACGACGTCCCATGGTGTTCCCATTGTTCCTCTC 249
Query 177 TCAACCAAATTCTTCTTCGAGATCCATCTCAATCCCACATCGAAAACTCCACAAATCCGA 236
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 250 TCAACCAAATTCTTCTTCGAGATCCATATCAATCCCACATCGAAAACTCCACAAATCCGA 309
Query 237 CTCAAAATCACTGCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAACGGGTA 296
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 310 CTCAAAATCACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGGGTA 369
Query 297 TTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTC 429
Query 357 TGGAAGTACTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGG 415
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGG 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5