BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939079

Length=863
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46220.2 | Symbols:  | unknown protein; INVOLVED IN: biologi...  73.1    4e-12


> AT3G46220.2 | Symbols:  | unknown protein; INVOLVED IN: biological_process 
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED 
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 
Protein of unknown function DUF2042 (InterPro:IPR018611). 
| chr3:16979048-16984082 FORWARD LENGTH=2677
Length=2677

 Score = 73.1 bits (39),  Expect = 4e-12
 Identities = 41/42 (98%), Gaps = 0/42 (0%)
 Strand=Plus/Plus

Query  212  CTTTTGCAACTGCTCAAAAGGAATGCGTAGACTCTTAttttt  253
            |||||||||||||||||||||||||||||||||||| |||||
Sbjct  881  CTTTTGCAACTGCTCAAAAGGAATGCGTAGACTCTTCTTTTT  922



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42096215186


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5