BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939086

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60480.1 | Symbols:  | unknown protein; Has 17 Blast hits to...   573    4e-163


> AT3G60480.1 | Symbols:  | unknown protein; Has 17 Blast hits 
to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:22347451-22348239 REVERSE 
LENGTH=596
Length=596

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 367/394 (93%), Gaps = 5/394 (1%)
 Strand=Plus/Plus

Query  3    TCGGGGAAAAGACGGCGAAAATGGAGGAACGGAACGAGGCCGGAACTGGTGCCGGAGAGA  62
            |||| ||||||||||||||||||||||||| ||||   || ||||| |||||||| || |
Sbjct  12   TCGGAGAAAAGACGGCGAAAATGGAGGAACAGAAC---GCTGGAACCGGTGCCGGCGAAA  68

Query  63   GCAGTTTGTTGGATGGATCAGCTCATTGGTGGTGGGCATTGGGAAGTGGAGCTCAAATCA  122
            ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct  69   GCAGTTTGTTGGATGGATCAGGTCACTGGTGGTGGGCATTGGGAAGTGGAGCCCAAATCA  128

Query  123  TGTGGGGAGTGCGATTGATTAGGAGAGGTTACGCCGGCGACGTTCGTTTAATGCCGCTCA  182
            |||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  129  TGTGGGGAATACGATTGATTCGGAGAGGTTACGCCGGCGACGTTCGATTAATGCCGCTCA  188

Query  183  AAGCCTTCGGTGTGGCGTCACTCTTCGTCGGCTCGTTAGCCACCAGCTCCGTCGCAATAG  242
            ||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||
Sbjct  189  AAGCCTTCGGTGTCGCATCACTCTTCGTCGGGTCGTTAGCCACCAGCTCCGTCGCATTAG  248

Query  243  TCCGCGCCACAGGGATCCACACGGTTCAAGATGCGATTGATCTTGGAGCCAACATTAGAA  302
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  249  TCCGCGCCACGGGGATCCACACGGTTCAAGATGCGATTGATCTTGGAGCCAACATTAGAA  308

Query  303  CCAATTTGGGGGTTACTCCTCAAATACCGGAAAAGAAAATCACTGAGAGAGAGACGGATG  362
            ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||  ||| ||
Sbjct  309  CCAATTTGGGGGTTACTCCTCAAATACCGGATAAGCAAATCACCGAGAGAGA--CGGGTG  366

Query  363  ATTTATCATGAACAGATCGAGCTTGAAGCTCTAT  396
            ||||||||||||||||||||||||||||||||||
Sbjct  367  ATTTATCATGAACAGATCGAGCTTGAAGCTCTAT  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5