BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939093

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60520.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   706    0.0  


> AT3G60520.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G02070.1); 
Has 107 Blast hits to 107 proteins in 14 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22361530-22362579 
REVERSE LENGTH=723
Length=723

 Score =  706 bits (382),  Expect = 0.0
 Identities = 414/430 (96%), Gaps = 0/430 (0%)
 Strand=Plus/Plus

Query  1    GCTAATTTAAGGAAACAAAAATGGTAGATCTTGAAAGAAGAGTGTGTTGCATGTGTGGTG  60
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  93   GCTAATTTAAGGAAACAAAAATGGTGGATCTTGAAAGAAGAGTGTGTTGCATGTGTGGTG  152

Query  61   ATGTGGGTTTCTTCGACAAGCTCTTTCATTGCAGCAAGTGCCTAAATCGCTTTCAACACT  120
            ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  153  ATGTGGGATTCTTCGACAAGCTCTTTCACTGCAGCAAGTGCCTTAATCGCTTTCAACACT  212

Query  121  CGTACTGTAGTAGTTATTACAAAGAGCAAGCTGATCCAATCAAGATCTGCGATTGGTGTC  180
            ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  213  CGTACTGTAGTAGCTATTACAAAGAGCAAGCTGATCCAATCAAGATCTGTGATTGGTGTC  272

Query  181  AGTTTGAAGCAAAGAGTCGAACCGGAGCAAAACACGGTGTTAATGGTGGATCGTCTAAGA  240
            ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  273  AGTGTGAAGCAAAAAGTCGAACCGGAGCAAAACACGGTGTTAATGGTGGATCGTCTAAGA  332

Query  241  GATCGTACAGGTCGGAATATTCTTCAGCTCATCACCAAATCAAGCAGCAAGAGGTTAACC  300
            |||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct  333  GATCGTACCGGTCGGAATATTCTTCACCTCATCACCAAATCAAACAGCAAGAGATTAACC  392

Query  301  AAAACACTAGTAGTAGTATTCCTCCAGCAGCCGACAAGGGTAAAACCGGCGTGCCTTCTC  360
            ||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  393  AAACCACTAGTAGTAGTATTCCTCCAGCAGCCGACAAGGGAAAAACTGGCGTGCCTTCTC  452

Query  361  CTAGACCGGCCACTCGCAGGTACAAGCTTCTCAAGGATGTTATGTGTTAGTAATGTTTTC  420
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  453  CTAGACCGGCCACTCGTAGGTACAAGCTTCTCAAGGATGTTATGTGTTAGTAATGTTTTC  512

Query  421  GAAATAACCA  430
            ||||||||||
Sbjct  513  GAAATAACCA  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20408706094


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5