BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939095

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60540.1 | Symbols:  | Preprotein translocase Sec, Sec61-bet...   390    3e-108
  AT2G45070.1 | Symbols: SEC61 BETA | Preprotein translocase Sec,...   222    1e-57 


> AT3G60540.1 | Symbols:  | Preprotein translocase Sec, Sec61-beta 
subunit protein | chr3:22374963-22375865 REVERSE LENGTH=481
Length=481

 Score =  390 bits (211),  Expect = 3e-108
 Identities = 262/286 (92%), Gaps = 6/286 (2%)
 Strand=Plus/Plus

Query  1    aaaaacaaaaagtgaagaaaaaaTGGTTGGAGGTGGAGCTCCACAGAGAGGAAGTGCAGC  60
            |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct  45   AAAAACAAGAAGTGAAGCAAAAATGGTTGGTGGTGGAGCTCCACAGAGAGGAAGTGCAGC  104

Query  61   TGCAACTGCAAGTATGAGAAGGAGGAAG-C--CTGGTGGTAG-TGC--CGGTGGTGGAGC  114
            |||||||||||| ||||| ||||||||| |  ||||||| ||  ||  ||  ||||| | 
Sbjct  105  TGCAACTGCAAGCATGAGGAGGAGGAAGCCTGCTGGTGGCAGCAGCAGCGCCGGTGGTGG  164

Query  115  AGCTGGAACAATGCTTCAGTTCTACACAGACGACGCGCCTGGTCTCAAGATTTCTCCAAA  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  165  AGCTGGAACAATGCTTCAGTTCTACACAGACGACGCGCCTGGTCTCAAGATATCTCCAAA  224

Query  175  TGTTGTTCTTATCATGAGTATTGGTTTCATTGCCTTTGTTGCTGTTCTTCATGTCATGGG  234
            |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct  225  TGTTGTTCTTATCATGAGCATTGGTTTCATTGCTTTTGTAGCTGTTCTTCATGTCATGGG  284

Query  235  TAAGCTCTATTTTGTCAAGAGCAAATGAAGAGGATACAAACAAAGC  280
            ||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct  285  TAAGCTCTATTTTGTCAAGAGCAAATGAAGACGATACATACAGAGC  330


> AT2G45070.1 | Symbols: SEC61 BETA | Preprotein translocase Sec, 
Sec61-beta subunit protein | chr2:18587082-18588259 REVERSE 
LENGTH=458
Length=458

 Score =  222 bits (120),  Expect = 1e-57
 Identities = 213/255 (84%), Gaps = 17/255 (7%)
 Strand=Plus/Plus

Query  14   gaagaaaaaaTGGTTGGAGGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGT  73
            ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct  75   GAAGAAAGAATGGTGGGAAGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGC  134

Query  74   ATGAG-A--AGGA-G--GA--AGC----CTGGTGGT--AG-TGCCGGTGGTGGAGCAGCT  118
            ||| | |  |||| |  ||  |||    |||||||   || ||||  |||||| ||||| 
Sbjct  135  ATGCGTAGGAGGAAGCCGACCAGCGGTGCTGGTGGAGGAGGTGCCTCTGGTGGTGCAGCC  194

Query  119  GGAACAATGCTTCAGTTCTACACAGACGACGCGCCTGGTCTCAAGATTTCTCCAAATGTT  178
            ||| | ||||||||||||||||| || ||||| |||||||||||||| || || ||||||
Sbjct  195  GGATCCATGCTTCAGTTCTACACCGATGACGCACCTGGTCTCAAGATCTCCCCCAATGTT  254

Query  179  GTTCTTATCATGAGTATTGGTTTCATTGCCTTT-GTTGCTGTTCTTCATGTCATGGGTAA  237
            |||||||||||||| || ||||||||||| ||| || ||||| |||||||| ||||| ||
Sbjct  255  GTTCTTATCATGAGCATCGGTTTCATTGC-TTTCGTCGCTGTGCTTCATGTTATGGGCAA  313

Query  238  GCTCTATTTTGTCAA  252
            |||||| ||||||||
Sbjct  314  GCTCTACTTTGTCAA  328



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13019346991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5