BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939100 Length=940 Score E Sequences producing significant alignments: (Bits) Value AT3G60580.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 1218 0.0 AT2G45120.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 244 9e-64 > AT3G60580.1 | Symbols: | C2H2-like zinc finger protein | chr3:22393939-22395044 FORWARD LENGTH=1106 Length=1106 Score = 1218 bits (659), Expect = 0.0 Identities = 856/944 (91%), Gaps = 41/944 (4%) Strand=Plus/Plus Query 1 CTCTGTTCTTGTTCTTGAAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCG 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49 CTCTGTTCTTGTTATTGAAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCG 108 Query 61 TTAATGGAAGAGCTTTAGGTGGTCACATGAGATCTCACATGCCGAGT-CTTCATGTTGAT 119 |||| |||| |||||||||||||||||||||||||||||| |||| |||| || Sbjct 109 TTAACGGAAAAGCTTTAGGTGGTCACATGAGATCTCACAT---GAGTAATTCA----CAT 161 Query 120 GAAGATGAAGAACAAAGGCCGAGTCAACTCAGTGATGAGACTGAGTCAGATGTTTCATCG 179 | || ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 162 G-AG--GAAGAACAAAGGCCGAGTCAACTCAGTTATGAGACTGAGTCCGATGTTTCTTCG 218 Query 180 TCTTCTTCAGAGGAAAAGAGAAATGGTTTGAGAGAGAATGATCCGAAGTTCTCTGTTCTT 239 || | || | | || || ||| | | || || |||||||||| Sbjct 219 TC-TGATC---CG---A-AG-TTTGCTTT---------T-A--CG-AG--CTCTGTTCTT 254 Query 240 CTTGAAGATGGTGAAAGCGAGACCGAGTCTTCTAGGAATGTTATTAACCTGACCCGGAAA 299 |||||||| ||||||||||||| |||||| || |||||||||||||||||||| |||||| Sbjct 255 CTTGAAGACGGTGAAAGCGAGAGCGAGTCGTCGAGGAATGTTATTAACCTGACTCGGAAA 314 Query 300 CGATCTAAGCGAACTCGGAAACTCGATTCGTTTGTAGCGAAGAAGGTGAAAACGAGTCAA 359 ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 315 CGATCCAAGCGAACTCGGAAACTCGATTCGTTTGTAACCAAGAAGGTGAAAACGAGTCAA 374 Query 360 CTCGGTTACAAGCCTGAGTCTGATCACGAGCCTCCTCATAGCTCAGCTTCTGATACAACG 419 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 375 CTCGGATACAAGCCTGAGTCTGATCAAGAGCCTCCTCATAGCTCAGCTTCTGATACAACG 434 Query 420 ACGGAAGAAGATCTAGCCTTTTGTCTCATGATGCTCTCgagagataaatggaagaagaac 479 ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 435 ACGGAGGAAGATCTTGCCTTTTGTCTCATGATGCTCTCTCGAGATAAATGGAAGAAGAAC 494 Query 480 aaaagtaataaagaagtagtagaagagatcgagacagaagaagaatcagaagGTTACAAC 539 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 495 AAAAGTAATAAAGAAGTAGTGGAAGAGATCGAGACAGAAGAAGAATCAGAAGGTTACAAC 554 Query 540 AAGATTAATCGAATAACAACGAAAGGGAGATACAAGTGTGAGACTTGTGGGAAAGTGTTC 599 |||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 555 AAGATTAATCGAGCAACAACGAAAGGAAGATACAAGTGTGAGACCTGCGGGAAAGTGTTC 614 Query 600 AAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAAC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 615 AAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAAC 674 Query 660 AA-AA--CAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCTGAGAAG 716 || || ||||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 675 AACAAAACAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCT-A-A-G 731 Query 717 AGAATCCATGAATGTCCGATATGTCTTAGAGTTTTTGCATCGGGACAAGCACTTGGAGGT 776 |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 732 AGAATCCATGAATGTCCGATTTGTCTAAGAGTTTTCGCATCGGGACAAGCACTTGGAGGT 791 Query 777 CATAAGAGATCTCACGGGATTGGGAATTTGTCTGTGAATCAGCATCATCAAGTTCATAGA 836 || || |||||||||||| | |||||||| ||||||||||| || | || |||||||||| Sbjct 792 CACAAAAGATCTCACGGGGTAGGGAATTTATCTGTGAATCAACAACGTCGAGTTCATAGA 851 Query 837 AACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGAC 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 852 AACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGAC 911 Query 897 GATGTCTCTGTGGTGTTTCAATGAATGCTGAATAAAGGTAACAG 940 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 912 GAAGTCTCTGTGGTGTTTCAATGAATGCTGAATAAAGGTAACAG 955 > AT2G45120.1 | Symbols: | C2H2-like zinc finger protein | chr2:18603618-18604751 FORWARD LENGTH=1134 Length=1134 Score = 244 bits (132), Expect = 9e-64 Identities = 445/583 (76%), Gaps = 74/583 (13%) Strand=Plus/Plus Query 395 TCATAGCTCAGCTTCTGATACAACGACGGAAGAAGATCTAGCCTTTTGTCTCATGATGCT 454 ||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| Sbjct 476 TCACAGCTCAGCTTCTGATACAACAACGGAGGAAGATCTCGCCTTTTGTCTCATTATGCT 535 Query 455 CTCgagagataaatggaagaagaacaaaagtaa-ta-aag-aa-gtagtagaag-agatc 509 || ||||| ||||||||| |||| ||| || | ||| || || ||||||| |||| Sbjct 536 GTCCAGAGACAAATGGAAG--CAACAGAAG-AAGAAGAAGCAACGT-GTAGAAGAAGAT- 590 Query 510 gagacagaagaagaatca--gaagGTTACAACAAGATTAATCGAATAACAACGAAAGGGA 567 |||||||| | | | || |||| || |||| || || | || | | | | ||||| Sbjct 591 GAGACAGATCATG-A-CAGTGAAGATT---ACAA-ATCAAGC-AAGAGC-A-G--AGGGA 639 Query 568 GATACAAGTGTGAGACTTGTGGGAAAGTGTTCAAATCTTATCAAGCATTAGGTGGGCATA 627 ||| |||||||||||||||||| |||||||| ||||| |||||||||||||| || || | Sbjct 640 GATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGCATTAGGAGGACACA 699 Query 628 GAGCAAGTCATAAGAAGAAC-AGAGTAAG--TAAC-AAAACAGAGCAACGAAGCGAAACA 683 ||||||| || ||||||||| || | | | | || |||||||||||| | |||||| Sbjct 700 GAGCAAGCCACAAGAAGAACAAG-GCATGCATGACGAAAACAGAGCAA-G--TTGAAACA 755 Query 684 GAGTATGATAATGTTGTTGTTGTTGCTGAGAAGAGAA-TCCATGAATGTCCGATATGTCT 742 ||||| | | | ||| | || ||||||| || | |||||||||||||| ||| | Sbjct 756 GAGTACG-T--TCTTG--G-AGTAAAGGAGAAGA-AAGTTCATGAATGTCCGATCTGTTT 808 Query 743 TAGAGTTTTTGCATC-GGGACAAGCACTTGGAGGTCATAAGAGATCTCACGGGA-T---- 796 ||| |||||| | || ||| |||||||||||||||||||||||||||||||| | | Sbjct 809 TAGGGTTTTTACTTCAGGG-CAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAACA 867 Query 797 T-GG-G-A--AT-----TTGTCTGTGAA-TCAGCATCATC-AAGTTC-ATAGAA-ACG-A 841 | || | | | ||||| || || ||| || || || | | | |||| | | | Sbjct 868 TCGGAGCAGGAAGAGGATTGTCAGT-AAGTCAA-ATTGTCCAAAT-CGA-AGAAGAAGTA 923 Query 842 GTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACC-AACCGAAGAAGACGATG 900 || ||||||||||||||||| |||||||||||||||||||| || |||||||| || Sbjct 924 -TCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAAT-GAAGAAGATGAAA 981 Query 901 TCT-CTGTGGTGTTTCAATGAATGCTGAATA--AA-GGTAACA 939 || || |||||||| | |||||| |||| | || ||||||| Sbjct 982 -CTTCTTTGGTGTTTGA-TGAATGGTGAAAACGAAAGGTAACA 1022 Score = 113 bits (61), Expect = 3e-24 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 15 TTG-AAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCGTTAATGGAAGAGC 73 ||| || |||||||| |||||||| || ||||||| ||||||||| | ||||||||||| Sbjct 56 TTGAAAAATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGC 115 Query 74 TTTAGGTGGTCACATGAGATCTCACATGC 102 ||||||||||||||||||||||||||||| Sbjct 116 TTTAGGTGGTCACATGAGATCTCACATGC 144 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45964244505 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5