BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939100
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60580.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 1218 0.0
AT2G45120.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 244 9e-64
> AT3G60580.1 | Symbols: | C2H2-like zinc finger protein | chr3:22393939-22395044
FORWARD LENGTH=1106
Length=1106
Score = 1218 bits (659), Expect = 0.0
Identities = 856/944 (91%), Gaps = 41/944 (4%)
Strand=Plus/Plus
Query 1 CTCTGTTCTTGTTCTTGAAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 CTCTGTTCTTGTTATTGAAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCG 108
Query 61 TTAATGGAAGAGCTTTAGGTGGTCACATGAGATCTCACATGCCGAGT-CTTCATGTTGAT 119
|||| |||| |||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 109 TTAACGGAAAAGCTTTAGGTGGTCACATGAGATCTCACAT---GAGTAATTCA----CAT 161
Query 120 GAAGATGAAGAACAAAGGCCGAGTCAACTCAGTGATGAGACTGAGTCAGATGTTTCATCG 179
| || ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 162 G-AG--GAAGAACAAAGGCCGAGTCAACTCAGTTATGAGACTGAGTCCGATGTTTCTTCG 218
Query 180 TCTTCTTCAGAGGAAAAGAGAAATGGTTTGAGAGAGAATGATCCGAAGTTCTCTGTTCTT 239
|| | || | | || || ||| | | || || ||||||||||
Sbjct 219 TC-TGATC---CG---A-AG-TTTGCTTT---------T-A--CG-AG--CTCTGTTCTT 254
Query 240 CTTGAAGATGGTGAAAGCGAGACCGAGTCTTCTAGGAATGTTATTAACCTGACCCGGAAA 299
|||||||| ||||||||||||| |||||| || |||||||||||||||||||| ||||||
Sbjct 255 CTTGAAGACGGTGAAAGCGAGAGCGAGTCGTCGAGGAATGTTATTAACCTGACTCGGAAA 314
Query 300 CGATCTAAGCGAACTCGGAAACTCGATTCGTTTGTAGCGAAGAAGGTGAAAACGAGTCAA 359
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 315 CGATCCAAGCGAACTCGGAAACTCGATTCGTTTGTAACCAAGAAGGTGAAAACGAGTCAA 374
Query 360 CTCGGTTACAAGCCTGAGTCTGATCACGAGCCTCCTCATAGCTCAGCTTCTGATACAACG 419
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 375 CTCGGATACAAGCCTGAGTCTGATCAAGAGCCTCCTCATAGCTCAGCTTCTGATACAACG 434
Query 420 ACGGAAGAAGATCTAGCCTTTTGTCTCATGATGCTCTCgagagataaatggaagaagaac 479
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 ACGGAGGAAGATCTTGCCTTTTGTCTCATGATGCTCTCTCGAGATAAATGGAAGAAGAAC 494
Query 480 aaaagtaataaagaagtagtagaagagatcgagacagaagaagaatcagaagGTTACAAC 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 495 AAAAGTAATAAAGAAGTAGTGGAAGAGATCGAGACAGAAGAAGAATCAGAAGGTTACAAC 554
Query 540 AAGATTAATCGAATAACAACGAAAGGGAGATACAAGTGTGAGACTTGTGGGAAAGTGTTC 599
|||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 555 AAGATTAATCGAGCAACAACGAAAGGAAGATACAAGTGTGAGACCTGCGGGAAAGTGTTC 614
Query 600 AAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAAC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAAC 674
Query 660 AA-AA--CAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCTGAGAAG 716
|| || ||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 675 AACAAAACAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCT-A-A-G 731
Query 717 AGAATCCATGAATGTCCGATATGTCTTAGAGTTTTTGCATCGGGACAAGCACTTGGAGGT 776
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 732 AGAATCCATGAATGTCCGATTTGTCTAAGAGTTTTCGCATCGGGACAAGCACTTGGAGGT 791
Query 777 CATAAGAGATCTCACGGGATTGGGAATTTGTCTGTGAATCAGCATCATCAAGTTCATAGA 836
|| || |||||||||||| | |||||||| ||||||||||| || | || ||||||||||
Sbjct 792 CACAAAAGATCTCACGGGGTAGGGAATTTATCTGTGAATCAACAACGTCGAGTTCATAGA 851
Query 837 AACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGAC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 AACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGAC 911
Query 897 GATGTCTCTGTGGTGTTTCAATGAATGCTGAATAAAGGTAACAG 940
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GAAGTCTCTGTGGTGTTTCAATGAATGCTGAATAAAGGTAACAG 955
> AT2G45120.1 | Symbols: | C2H2-like zinc finger protein | chr2:18603618-18604751
FORWARD LENGTH=1134
Length=1134
Score = 244 bits (132), Expect = 9e-64
Identities = 445/583 (76%), Gaps = 74/583 (13%)
Strand=Plus/Plus
Query 395 TCATAGCTCAGCTTCTGATACAACGACGGAAGAAGATCTAGCCTTTTGTCTCATGATGCT 454
||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 476 TCACAGCTCAGCTTCTGATACAACAACGGAGGAAGATCTCGCCTTTTGTCTCATTATGCT 535
Query 455 CTCgagagataaatggaagaagaacaaaagtaa-ta-aag-aa-gtagtagaag-agatc 509
|| ||||| ||||||||| |||| ||| || | ||| || || ||||||| ||||
Sbjct 536 GTCCAGAGACAAATGGAAG--CAACAGAAG-AAGAAGAAGCAACGT-GTAGAAGAAGAT- 590
Query 510 gagacagaagaagaatca--gaagGTTACAACAAGATTAATCGAATAACAACGAAAGGGA 567
|||||||| | | | || |||| || |||| || || | || | | | | |||||
Sbjct 591 GAGACAGATCATG-A-CAGTGAAGATT---ACAA-ATCAAGC-AAGAGC-A-G--AGGGA 639
Query 568 GATACAAGTGTGAGACTTGTGGGAAAGTGTTCAAATCTTATCAAGCATTAGGTGGGCATA 627
||| |||||||||||||||||| |||||||| ||||| |||||||||||||| || || |
Sbjct 640 GATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGCATTAGGAGGACACA 699
Query 628 GAGCAAGTCATAAGAAGAAC-AGAGTAAG--TAAC-AAAACAGAGCAACGAAGCGAAACA 683
||||||| || ||||||||| || | | | | || |||||||||||| | ||||||
Sbjct 700 GAGCAAGCCACAAGAAGAACAAG-GCATGCATGACGAAAACAGAGCAA-G--TTGAAACA 755
Query 684 GAGTATGATAATGTTGTTGTTGTTGCTGAGAAGAGAA-TCCATGAATGTCCGATATGTCT 742
||||| | | | ||| | || ||||||| || | |||||||||||||| ||| |
Sbjct 756 GAGTACG-T--TCTTG--G-AGTAAAGGAGAAGA-AAGTTCATGAATGTCCGATCTGTTT 808
Query 743 TAGAGTTTTTGCATC-GGGACAAGCACTTGGAGGTCATAAGAGATCTCACGGGA-T---- 796
||| |||||| | || ||| |||||||||||||||||||||||||||||||| | |
Sbjct 809 TAGGGTTTTTACTTCAGGG-CAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAACA 867
Query 797 T-GG-G-A--AT-----TTGTCTGTGAA-TCAGCATCATC-AAGTTC-ATAGAA-ACG-A 841
| || | | | ||||| || || ||| || || || | | | |||| | | |
Sbjct 868 TCGGAGCAGGAAGAGGATTGTCAGT-AAGTCAA-ATTGTCCAAAT-CGA-AGAAGAAGTA 923
Query 842 GTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACC-AACCGAAGAAGACGATG 900
|| ||||||||||||||||| |||||||||||||||||||| || |||||||| ||
Sbjct 924 -TCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAAT-GAAGAAGATGAAA 981
Query 901 TCT-CTGTGGTGTTTCAATGAATGCTGAATA--AA-GGTAACA 939
|| || |||||||| | |||||| |||| | || |||||||
Sbjct 982 -CTTCTTTGGTGTTTGA-TGAATGGTGAAAACGAAAGGTAACA 1022
Score = 113 bits (61), Expect = 3e-24
Identities = 80/89 (90%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 15 TTG-AAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCGTTAATGGAAGAGC 73
||| || |||||||| |||||||| || ||||||| ||||||||| | |||||||||||
Sbjct 56 TTGAAAAATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGC 115
Query 74 TTTAGGTGGTCACATGAGATCTCACATGC 102
|||||||||||||||||||||||||||||
Sbjct 116 TTTAGGTGGTCACATGAGATCTCACATGC 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5