BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939103

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60590.3 | Symbols:  | unknown protein; BEST Arabidopsis tha...   684    0.0  


> AT3G60590.3 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G48460.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr3:22398228-22399753 FORWARD LENGTH=1215
Length=1215

 Score =  684 bits (370),  Expect = 0.0
 Identities = 380/385 (99%), Gaps = 0/385 (0%)
 Strand=Plus/Plus

Query  107   GTTACTTCTCTTCGGATCCCAATCTGGCCTACTCGCTTCTCTCCAACCCCAGCTTCCTTT  166
             |||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct  831   GTTACTTCTCTTCGGATCCCAATCTGGCCTTCTCGCTTCTCTCCAGCCCCAGATTCCTTT  890

Query  167   CCTCTCGTCCGCTGTTATCCTCTTCCCGTACTTCATTCTCCTTGCTGTTCAGACATTAAC  226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  891   CCTCTCGTCCGCTGTTATCCTCTTCCCGTACTTCATTCTCCTTGCTGTTCAGACATTAAC  950

Query  227   AGAGATCCTCACATGGCACTGGCAATCACCGGTCTGGCTAGTCACACCAGTTGTCTACGA  286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  951   AGAGATCCTCACATGGCACTGGCAATCACCGGTCTGGCTAGTCACACCAGTTGTCTACGA  1010

Query  287   GGCTTACCGAATCTTGCAACTGATGAGAGGGTTGACACTTAGTGCAGAGGTCAACGCACC  346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1011  GGCTTACCGAATCTTGCAACTGATGAGAGGGTTGACACTTAGTGCAGAGGTCAACGCACC  1070

Query  347   CGTTTGGGTGGTTCATATGCTTCGTGGGCTTGTCTCTTGGTGGGTATTGATCTTAGGAAT  406
              ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1071  GGTTTGGGTGGTTCATATGCTTCGTGGGCTTGTCTCTTGGTGGGTATTGATCTTGGGAAT  1130

Query  407   GCAACTCATGAGAGTTGCTTGGTTTGCTGGTTTTGCATCTAGAACAACAACAGGTCAGCA  466
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1131  GCAACTCATGAGAGTTGCTTGGTTTGCTGGTTTTGCATCTAGAACAACAACAGGTCAGCA  1190

Query  467   ACCACAATCTGTTGCTTCTAAGTAA  491
             |||||||||||||||||||||||||
Sbjct  1191  ACCACAATCTGTTGCTTCTAAGTAA  1215



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24464029589


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5