BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939108

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60640.1 | Symbols: ATG8G | Ubiquitin-like superfamily prote...   431    2e-120


> AT3G60640.1 | Symbols: ATG8G | Ubiquitin-like superfamily protein 
| chr3:22415835-22417158 FORWARD LENGTH=643
Length=643

 Score =  431 bits (233),  Expect = 2e-120
 Identities = 258/270 (96%), Gaps = 2/270 (1%)
 Strand=Plus/Plus

Query  19   AAGATGAGT-ACTGGCAGCTTCAAGCAGGATCATGATTTCGAGAAAAGGAAAGCTGAGGC  77
            ||||||||| || | |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct  88   AAGATGAGTAAC-GTCAGCTTCAGGCAGGATCATGATTTCGAGAAGAGGAAAGCTGAGGC  146

Query  78   TTTAAGGATCAGAGACAAGTATCCTGACAGAGTCCCGGTGATTGTGGAGAAGTCAGAGAA  137
            ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  147  TTTAAGGATCAGAGAGAAGTATTCTGACAGAGTCCCGGTGATTGTGGAGAAGTCAGAGAA  206

Query  138  AAGTGATATCCCAAACATTGACAAGAAGAAATACCTCGTCCCAGCTGATCTAACCGTTGG  197
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct  207  AAGTGATATCCCAAACATTGACAAGAAGAAATACCTTGTCCCAGCTGATCTAACGGTAGG  266

Query  198  CCAGTTTGTGTATGTGATTCGTAAAAGAATCCAACTTAGTGCGGAGAAAGCTATCTTCAT  257
            |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  267  CCAGTTTGTGTATGTGATTCGTAAGAGAATCCAACTTAGTGCAGAGAAAGCTATCTTCAT  326

Query  258  CTTTGTTGATAATGTTCTTCCTCCCACCGG  287
            ||||||||||||||||||||||||||||||
Sbjct  327  CTTTGTTGATAATGTTCTTCCTCCCACCGG  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15030056951


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5