BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939113
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60680.1 | Symbols: | Plant protein of unknown function (DU... 2187 0.0
> AT3G60680.1 | Symbols: | Plant protein of unknown function (DUF641)
| chr3:22429960-22432042 FORWARD LENGTH=2083
Length=2083
Score = 2187 bits (1184), Expect = 0.0
Identities = 1443/1558 (93%), Gaps = 58/1558 (4%)
Strand=Plus/Plus
Query 8 GCG-ATTTAGAGAGATGCGGGAAGTGGAAACATCGGCAATCACAGCAGCAGCAGCTCCTC 66
||| |||| ||| ||||||||||||||||||| ||||||| || |||||| |||
Sbjct 273 GCGTATTTTGAGCGATGCGGGAAGTGGAAACAACGGCAAT-----CA-CAGCAG---CTC 323
Query 67 CTCCACAATTCTCTCAAATGTTTCAGAAACTAGCCATGGCGGTCAAAACCAAGACCTACG 126
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 324 CTCCACAATTCTCTCAAATGTTTCAGAAATTAGCCATGGCCGTCAAGACCAAGACCTACG 383
Query 127 AGTTCTTCACCGAAGACGATAATGACGAGAGAACCACCGATGCTGAGGGTTTCTCTCTCC 186
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |
Sbjct 384 AGTTCTTCACCGAAGACGATAAT---GAGAG-A--ACCGATGCTGAGGGTTTCTCTCTTC 437
Query 187 TCGACTCCTCCGAGGATTTTATCACCGATCAGAAAGTCGTCGTTCTTAAACCCGATAGGC 246
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 438 TCGATTCCTCCGAGGATTTTATCACCGATCAGAAAGTCGTCGTTCTTAAACCCGATAAGC 497
Query 247 Ctcttctta---cttcttct------tct--tctt-cttctCCGGTGAACGATGCTCAGA 294
||||||||| |||||||| ||| | || |||||||||||||||| |||||
Sbjct 498 CTCTTCTTAGTGCTTCTTCTCCGGGATCTCCTATTGAATCTCCGGTGAACGATGTTCAGA 557
Query 295 CGAGGAGGAATTTGGGTGCGGTAAGTGTTAATAAACC---T------AA------TCAGG 339
||| | ||||||||||| |||||||||| |||||| | || |||||
Sbjct 558 CGA--A-GAATTTGGGTGTGGTAAGTGTTGTTAAACCTAATCAAAAGAAGCTTTCTCAGG 614
Query 340 TTAGGAAATTGGATACCCAGTTGGGTTTGAGTTTGATTTCGTCTGTTTTCGCTACTGCTT 399
|||||||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||
Sbjct 615 TTAGGAAATTGGATACACAGATGGGATTGAGTTTGATTTCTTCTGTTTTCGCTACTGCTT 674
Query 400 CGTCTTTTGAAGCTTCGTATCTTCAATTGCAAGCTGCTCACGCCCCTTTTGTTGAGTATA 459
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |
Sbjct 675 CGTCTTTTGAAGCTTCGTATCTTCAATTGCAAGCTGCTCACGCGCCGTTTGTTGAGGAAA 734
Query 460 ATGTCAAGGCTGCTGATAGAGCTCTCGTCTCTAACCTCCAGAAATTGTCTGATTTGAAGC 519
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 735 ATGTCAAGGCTGCTGATAGAGCTCTCGTATCTAACCTCCAGAAATTGTCTGATTTGAAGC 794
Query 520 AGTTTTATAGGAATTATCGCCAAAGTTCGGATTTTGAGTCTGATTTAGCTATTGGGTCTT 579
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 795 AGTTTTATAGGAATTATCGCCAAAGTTTGGATTTTGAGTCTGATTTAGCTATTGGGTCTT 854
Query 580 GCTTAGAATCTCGGGTTCAGGAGAATCAGAGCAAGCTTAGAGCTTTGGAAACGGTCTCAA 639
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 855 GCTTAGAATCTCGTGTTCAGGAGAATCAGAGCAAGCTTAGAGCTTTGGAAACCGTCTCAA 914
Query 640 ATCGGTTACAAGCTGAGATGGATGCAAAGGATTTGCAGGTTTGGAGTCTGAGGAACAAAT 699
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 ATCGTTTACAAGCTGAGATGGATGCAAAGGATTTGCAGGTTTGGAGTCTGAGGAACAAAT 974
Query 700 TAGGTGAGATTCAGAAATCTAATTCCAAGTTATCAAAGAGACTGTCTTCAAATTCATCAT 759
||||||||||||||||||||| ||||||||| || |||||| |||||||||||||||| |
Sbjct 975 TAGGTGAGATTCAGAAATCTACTTCCAAGTTGTCTAAGAGATTGTCTTCAAATTCATCGT 1034
Query 760 TGGATGTTCTGTTATCGGTTAGGGTTTATGAGTCTCTGTTGCATGATGCCTTTAAAGCTA 819
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1035 TGGATGTTCTGTTATCGGTTAGGGTTTTTGAGTCTCTGTTGTATGATGCCTTTAAAGCTA 1094
Query 820 CTCAGAAATTCACTAAGATTCTGATTGAGTTGATGGAAAAAGCTGGCTGGGATTTGGATT 879
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1095 CTCAGAAATTCACTAAGATTCTGATTGAGTTGATGGAAAAAGCTGGGTGGGATTTGGATT 1154
Query 880 TAGTGGCTAAGTCTGTTCACCCTGAGGTAGATTATGCTAA-GAAAGGACATAACCGGTAT 938
||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||
Sbjct 1155 TAGTGGCTAAGTCTGTTCATCCTGAGGTAGATTATGCTAAGGAGA-GACATAACCGGTAT 1213
Query 939 GCATTGTTGTCGTATGTTTGCTTGGGGATGTTTCGTGGTTTTGATGGAGAAGGATTTGAT 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 GCATTGTTGTCGTATGTTTGCTTGGGGATGTTTCGTGGTTTTGATGGAGAAGGATTTGAT 1273
Query 999 CTAAATGAGAATGATGATGAAGAGTTTCAGAGA-G------A--TTCTTCGTTGAGGGAA 1049
||||||||||||||| ||||||||| | ||||| | | |||||| |||||||||
Sbjct 1274 CTAAATGAGAATGATTATGAAGAGTCTGAGAGAAGTTCTGTAGATTCTTCCTTGAGGGAA 1333
Query 1050 TTGATGCAACATGTATCGAGTAATCCGATGGAACTTCTTGATAGAGATAAAGATTGTGCA 1109
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1334 TTGATGCAACATGTATCGAGTAATCCGATGGAGCTTCTTGATAGAGATAAAGATTGTGCA 1393
Query 1110 TTCTCTAGATTTTGCGATAAGAAGTATCACGAGCTCATTCATCCGAACATGGCATCTTCG 1169
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1394 TTCTCTAGATTTTGCGATAAGAAGTATCACGAGCTGATTCATCCGAACATGGCATCTTCG 1453
Query 1170 ATATTCAGTAACATGGATGAAAATGAAGCTGTGTTGAGTTCTTGGAGATCTCTGAGCACA 1229
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1454 ATATTCAGTAACATGGATGAAAACGAAGCTGTGTTGAGTTCTTGGAGATCTTTGAGCACA 1513
Query 1230 TTCTATGAATCGTTTGTCACTATGGCTAGCTCGATTTGGACCCTTCACAAGTTAGCCTTG 1289
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1514 TTCTATGAATCGTTTGTCACGATGGCTAGCTCGATTTGGACCCTTCACAAGTTAGCCTTG 1573
Query 1290 TCCTTTGATCCTGCTGTTGAGATTTTCCAAGTTGAAAGCGGAGTGGATTTTTCGATTGTT 1349
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1574 TCCTTTGATCCTGCAGTTGAGATTTTCCAAGTTGAAAGCGGAGTGGAATTTTCGATTGTT 1633
Query 1350 TTCATGGAGAATGTCTTAAAAAGAAAACAAGATAAGAAGTTTTCGATGAATCCTACTCGA 1409
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1634 TTCATGGAGAATGTCTTAAAAAGAAAACAAGATAAGAAGTTTTCGATGAGTCCTACTCGA 1693
Query 1410 GCCAAAGTAGGATTCACAGTGGTTCCCGGTTTTAAAATCGGGTGCACAGTGATTCAGTCT 1469
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1694 GCCAAAGTAGGATTCACAGTGGTTCCCGGGTTTAAAATCGGGTGCACCGTGATTCAGTGT 1753
Query 1470 CAAGTTTACCTTAACGGCGGCTTCAAA-TGTAAATGAAGGAGACCGATGGTTAAGCCG 1526
||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 1754 CAAGTTTACCTTACCGGCGGCTCCAAAATGTAAATGAAAGAGACCGATGGTTAAGCCG 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5