BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939120
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60770.1 | Symbols: | Ribosomal protein S13/S15 | chr3:2246... 1190 0.0
> AT3G60770.1 | Symbols: | Ribosomal protein S13/S15 | chr3:22460189-22461779
REVERSE LENGTH=915
Length=915
Score = 1190 bits (644), Expect = 0.0
Identities = 680/697 (98%), Gaps = 3/697 (0%)
Strand=Plus/Plus
Query 2 AAGCGCAGTC-GCAGCCGGAAGAAACCAACCGAGGAAGAACGATCTCAGTGAGAGGAAGA 60
|||||||| | ||||||| |||||| |||||||||||||||||||||||||||||| ||
Sbjct 46 AAGCGCAG-CAGCAGCCGTAAGAAAGAAACCGAGGAAGAACGATCTCAGTGAGAGGACGA 104
Query 61 TCACTTCGCCGTCGCAGCCATGGGTCGAATGCATAGTAAAGGTAAGGGTATCTCGGCATC 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 105 TCACTTCGCCGTCGCAGTCATGGGTCGAATGCATAGTAGAGGTAAGGGTATCTCGGCATC 164
Query 121 TGCTTTGCCGTACAAGCGTTCATCTCCGAGCTGGCTCAAGACAACTCCTCAGGATGTTGA 180
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 165 TGCTTTGCCGTACAAGCGTTCATCTCCGAGCTGGCTCAAGACAACCCCTCAAGATGTTGA 224
Query 181 TGAGTCCATTTGCAAGTTTGCAAAGAAGGGTTTGACCCCATCGCAGATTGGTGTTATTCT 240
||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 225 TGAGTCCATCTGCAAATTTGCGAAGAAGGGTTTGACCCCATCGCAGATTGGTGTCATTCT 284
Query 241 TCGTGACTCTCACGGAATTCCACAGGTGAAAAGTGTTACTGGAAGCAAGATTCTCAGAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TCGTGACTCTCACGGAATTCCACAGGTGAAAAGTGTTACTGGAAGCAAGATTCTCAGAAT 344
Query 301 TTTGAAAGCTCATGGTCTTGCACCTGAGATCCCTGAGGATCTGTATCACTTGATCAAGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TTTGAAAGCTCATGGTCTTGCACCTGAGATCCCTGAGGATCTGTATCACTTGATCAAGAA 404
Query 361 AGCTGTTGCTATCCGCAAGCACCTTGAGAGGAACAGGAAAGATAAGGATTCCAAATTCAG 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 405 AGCTGTTGCTATCCGCAAGCATCTTGAGAGGAACAGGAAAGATAAGGATTCCAAATTCAG 464
Query 421 GCTGATTCTTGTAGAGAGCAGAATCCATCGTCTTGCTCGTTACTACAAGAAGACCAAGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GCTGATTCTTGTAGAGAGCAGAATCCATCGTCTTGCTCGTTACTACAAGAAGACCAAGAA 524
Query 481 GCTCCCACCCGTCTGGAAGTATGAGTCTACAACTGCAAGCACTCTTGTGGCTTGAGAAGA 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 525 GCTCCCACCCGTCTGGAAGTACGAGTCTACAACTGCAAGCACTCTTGTGGCTTGAGAAGA 584
Query 541 ATAGAGTTGATCATGTCCTTCAAGAAGGACCATTTCATTGTCTGCATTGCAACTCAAAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 ATAGAGTTGATCATGTCCTTCAAGAAGGACCATTTCATTGTCTGCATTGCAACTCAAAGC 644
Query 601 TCTTCTTCTTTTGAACCTATGTATCTGTTTTCGCTAGTTTTGATGGGTTACAACTTGCTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TCTTCTTCTTTTGAACCTATGTATCTGTTTTCGCTAGTTTTGATGGGTTACAACTTGCTA 704
Query 661 TGAGATTTTTGATTTTAGGGAACGAATTTGTTTATGC 697
||||||||| |||||||||||||||||||||||||||
Sbjct 705 TGAGATTTT-GATTTTAGGGAACGAATTTGTTTATGC 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5