BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939123
Length=964
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60800.1 | Symbols: | DHHC-type zinc finger family protein ... 1609 0.0
> AT3G60800.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:22467173-22469592 REVERSE LENGTH=1556
Length=1556
Score = 1609 bits (871), Expect = 0.0
Identities = 937/968 (97%), Gaps = 7/968 (1%)
Strand=Plus/Plus
Query 1 TTTCGATCGTTGC-TTTGACTATGCATAGATCTGGTACAACAATGGCGTGGAACGTATTC 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTCGATCGTTGCTTTTGACTATGCATAGATCTGGTACAACAATGGCGTGGAACGTATTC 358
Query 60 AAATTCTGTACTGCCTTACGAGGTCTTGGATCGATCATGATCCTTTTGGTTCTTGGTGTT 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGTTCTGTACTGCCTTACGAGGTCTTGGATCGATCATGATCCTTTTGGTTCTTGGTGTT 418
Query 120 GTCGGTGTTACTTATTACGCTGTCGTTTTGACTAATTATGGTCCTGCCCTCTCTCAAGGT 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 GTCGGTGTTACTTATTACGCTGTCGTTTTGACTAATTATGGTCCTGCACTCTCTCAAGGT 478
Query 180 GGCCTTGATTCTCTTGCTGCTCTTACTATCTTAATCCTCTTCCATTTCCTCTTGGCAATG 239
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 479 GGCCTTGATTCTCTTGCTGCTCTCACTATCTTAATCCTCTTCCATTTCCTCCTGGCAATG 538
Query 240 CTTTTGTGGAGCTATTTCTCAGTTGTTTTTACTGATCCTGGTGTTGTGCCTCCTAATTGG 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 CTTTTGTGGAGCTATTTCTCAGTGGTTTTTACTGATCCTGGTGTTGTGCCTCCTAATTGG 598
Query 300 AGACCATCTACTGATGAAGAAAGAGGTGAATCTGATCCGTTAAACAGTTTGGAGTTTGTT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 599 AGACCATCTACTGATGAAGAAAGAGGTGAATCTGATCCGTTAAATAGTTTGGACTTTGTT 658
Query 360 GGTTTACAAGCTGA---TTCTTCTTCAAACCCAAGAGTTCGGTTTTGTAGAAAGTGCAAT 416
||||||||| | || ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 659 GGTTTACAATCCGATTCTTCTTCTTCAAACCCAAGAGTTCGGTTTTGTCGGAAGTGCAAT 718
Query 417 CAACTAAAACCTTCTCGTTGTCATCATTGTTCTGTTTGTGGTCGGTGTGTGTTGAAGATG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAACTAAAACCTTCTCGTTGTCATCATTGTTCTGTTTGTGGTCGGTGTGTGTTGAAGATG 778
Query 477 GATCACCATTGTGTTTGGGTTGTTAACTGTGTAGGAGCACTGAATTATAAGTATTTTCTT 536
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 GATCACCATTGTGTTTGGGTTGTTAACTGTGTAGGAGCACTGAACTATAAGTATTTTCTT 838
Query 537 CTTTTCTTGTTCTACACATTTTTAGAGACGACTCTTGTGACTTTGGTTCTTATGCCGCAC 596
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 CTTTTCTTGTTCTACACATTTTTAGAGACGACCCTTGTGACTTTGGTTCTTATGCCGCAC 898
Query 597 TTCATTGCATTCTTTAGTGATGAAGAAATACCTGGAACCCCGGGAACTCTTGCTACTACT 656
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 899 TTCATTGCATTCTTTAGTGATGAAGAAATACCTGGAACCCCAGGCACTCTTGCTACTACT 958
Query 657 TTTCTTGCATTTGTTTTGAACTTGGCATTTGCTTTGAGCGTGATGGGTTTCTTAATCATG 716
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 959 TTTCTTGCATTTGTTTTGAACTTGGCATTTGCGTTGAGCGTGATGGGTTTCTTAATTATG 1018
Query 717 CACATTTCTTTGGTAGCTGGCAATACCACAACTATAGAGGCATATGAGAAGAAAACCAGT 776
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 CATATTTCCTTGGTAGCTGGCAATACCACAACTATAGAGGCATATGAGAAGAAAACCACT 1078
Query 777 ACAAAATGGCGGTATGACCTCGGTAAAAAGAAAAACTTTGAACAGGTATTTGGAATGGAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACAAAATGGCGGTATGACCTCGGTAAAAAGAAAAACTTTGAACAGGTATTTGGAATGGAT 1138
Query 837 AAGAGATACTGGCTAATCCCAGGATACACAGAAGAAGATCTAAGGCGAATGCCGGAGCTG 896
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGAGATACTGGTTAATCCCAGGATACACAGAAGAAGATCTAAGGCGAATGCCGGAGCTG 1198
Query 897 CAGGGACTCGAATACCCTTCGAAACCCGACTTTGATTCCCAGTGATACTGAAGAAAATGA 956
|||||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1199 CAGGGACTTGAATACCCTTCGAAACCCGACTTTGATTCCCAGTGATGCTCAAGAA---GA 1255
Query 957 CTTTGATC 964
||||||||
Sbjct 1256 CTTTGATC 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47169864033
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5