BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939125
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60820.1 | Symbols: PBF1 | N-terminal nucleophile aminohydro... 1179 0.0
> AT3G60820.1 | Symbols: PBF1 | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:22471769-22473939
REVERSE LENGTH=1071
Length=1071
Score = 1179 bits (638), Expect = 0.0
Identities = 686/710 (97%), Gaps = 0/710 (0%)
Strand=Plus/Plus
Query 3 TTCTCTCTCAAATCCACCATGACTAAGCAGCACGCGAACTGGTCTCCTTACGATAACAAT 62
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 113 TTCTCTCTCAAATCCGCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAAT 172
Query 63 GGAGGAACATGTGTGGCCATCGCTGGATCGGATTACTGCGTCATCGCCGCCGATACTCGG 122
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 173 GGAGGAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATACTCGG 232
Query 123 ATGTCTACTGGTTACAGTATTCTTAGCCGCGATTACTCAAAAATCCATAAACTAGCAGAC 182
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 233 ATGTCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTAGCGGAC 292
Query 183 AGAGCTGTGTTGTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCATTGCAGAAGGTTCTC 242
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 293 AGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTC 352
Query 243 AAATCCAGACACTTGATCTATCAGCATCAGCATAACAAGCAGATGAGCTGTCCTGCAATG 302
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 353 AAATCCAGACACTTGATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATG 412
Query 303 GCCCAGCTTCTCTCCAACACGCTTTATTTCAAGCGGTTTTTCCCCTACTATGCCTTTAAT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GCCCAGCTTCTCTCCAACACGCTTTATTTCAAGCGGTTTTTCCCCTACTATGCCTTTAAT 472
Query 363 GTTCTAGGAGGGCTTGACGAGGAAGGAAAAGGGTGTGTCTTTACTTACGACGCCGTTGGA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 473 GTTCTAGGAGGGCTTGACGAGGAAGGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGC 532
Query 423 TCATATGAGAGAGTTGGATATGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTC 482
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 533 TCATACGAGAGAGTTGGATACGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTC 592
Query 483 CTTGACAACCAGCTCAAGTCTCCAAGTCCTCTTCTGCTACCTAAACAGGATTCGAACACA 542
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 593 CTTGACAATCAGCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAGGATTCAAACACG 652
Query 543 CCCCTTTCAGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAG 602
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAG 712
Query 603 AGGGATATCTACACTGGAGACAGGCTTGAGATTATGATACTTAAGGCTGACGGTATCAAG 662
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 713 AGGGATATCTACACTGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAG 772
Query 663 ACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTGCGTGCATTTAGC 712
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 773 ACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTTAGTGCATTTAGC 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5