BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939159

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61185.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   276    7e-74


> AT3G61185.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr3:22648833-22649205 REVERSE LENGTH=373
Length=373

 Score =  276 bits (149),  Expect = 7e-74
 Identities = 186/203 (92%), Gaps = 6/203 (3%)
 Strand=Plus/Plus

Query  1    TTTCAtttttttCTATTAGGGATGGTGACCAAGGAAACAAAAGCAGAAGGAGAAAAA--G  58
            ||| ||| || | |||||||||||||||| ||||||||| |||||||||||||||||  |
Sbjct  169  TTTTATTATTAT-TATTAGGGATGGTGACTAAGGAAACACAAGCAGAAGGAGAAAAAGTG  227

Query  59   TGTGTCATCATAATCTTATAACACCAACCGAAGGCTGTGAAGCTTCGACGTGTGATGCTA  118
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  228  TGTGTCATCATAATCTTATAACACCAACCGAAGGCTGTAAAGCTTCGCCGTGTGATGCTA  287

Query  119  TGTGTGCTTCAAGGTTTAAGGGAGGAGTAGGCGGGTGTTCTAAAACCAATAAATTTACCT  178
            ||||||||||||||||||||||||   |||||||||||||||||||| || | |||||||
Sbjct  288  TGTGTGCTTCAAGGTTTAAGGGAG---TAGGCGGGTGTTCTAAAACCGATCAGTTTACCT  344

Query  179  GCACCTGCATGTTTATTTGCAAA  201
            ||| |||||||||||||||||||
Sbjct  345  GCAACTGCATGTTTATTTGCAAA  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10304888545


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5