BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939170
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61290.1 | Symbols: | Arabidopsis thaliana protein of unkno... 830 0.0
AT3G61280.1 | Symbols: | Arabidopsis thaliana protein of unkno... 521 3e-147
AT2G45840.1 | Symbols: | Arabidopsis thaliana protein of unkno... 200 1e-50
> AT3G61290.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr3:22684407-22686907 FORWARD LENGTH=1503
Length=1503
Score = 830 bits (449), Expect = 0.0
Identities = 495/518 (96%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 178 ATGATGACCATATCAATATTGACAACGACAAACACAATCATCAAGATCCCTTTAAACTGC 237
|||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1 ATGATGACTACATCAATATTGACAACGACAAACACAATCATCAAAATCCCTTTAAAGTGC 60
Query 238 AACGCAAAACAAACATGCCCTTCAAATTATCCAAGCAGATTCGAACCAGCGATCTCTTCC 297
||||||| ||||||||| ||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 61 AACGCAACACAAACATGTCCTTCAACTTATCCAAGCAGATTGGAACCAATGATCTCTTCC 120
Query 298 TCGGAAACTTGTCCTGACTACTTCAGATGGATCCAACAAGACCTAAAAGCATGGGAAGAG 357
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TTGGAAACTTGTCCTGACTACTTCAGATGGATCCAACAAGACCTAAAAGTATGGGAAGAG 180
Query 358 ACAGGGATCACAAGGGAAACACTAGAGAGAGCAAAACCAAAAGCTCATTTCAGGCTAGTG 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACAGGGATCACAAGGGAAACACTAGAGAGAGCAAAACCAAAGGCTCATTTCAGGCTAGTG 240
Query 418 ATTAAGTCAGGGAGATTGTATGTTCATCAGTACGACAAGGCTTATGAGTCAAGAGATGTT 477
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATAAAGTCAGGGAGATTGTACGTTCATCAGTACGACAAGGCTTATGAGTCAAGAGATGTG 300
Query 478 CTCACAATCTGGGGGATACTTCAGCTTCTAAGAATGTATCCTGGTCAAGTCCCTGATCTT 537
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 301 CTCACAATCTGGGGGATACTTCAACTTTTAAGAATGTATCCTGGTCAAGTCCCTGATCTT 360
Query 538 GAGCTTCTCTTCTTCTGTCATGATAAACCCGCTATTTGGAAACGAGACTTTAGGCAACCA 597
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 361 GAGCTTCTCTTCTTCTGTCATGATATACCAGCTATTTGGAAACGAGACTTTAGGCAACCG 420
Query 598 CAACCAAATGCCACGTGGCCTCCTCCACCGTTGTTTCAGTACTGTGGTCACCGTGAAGCC 657
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GAACCAAATGCCACGTGGCCTCCTCCGCCGTTGTTTCAGTACTGTGGTCACCGTGAAGCC 480
Query 658 TACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGGCTG 695
||||||||||||||||||||||||||||||||||||||
Sbjct 481 TACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGGCTG 518
> AT3G61280.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr3:22680960-22683769 FORWARD LENGTH=1976
Length=1976
Score = 521 bits (282), Expect = 3e-147
Identities = 406/465 (87%), Gaps = 11/465 (2%)
Strand=Plus/Plus
Query 232 AACTGCAACGCAAAACAAACATGCCCTTCAAATTATCCAAGC-AGATTCGAACCAGCGAT 290
||| ||||| ||| ||||||||| ||||||||||| |||| | || ||||||||||||||
Sbjct 501 AACAGCAACACAACACAAACATGTCCTTCAAATTACCCAACCAAG-TTCGAACCAGCGAT 559
Query 291 CTCTTCCTCGGAAACTTGTCCTGACTACTTC-AGATGGATCCAACAAGACCTAAAAGCAT 349
|||||||||||| || ||||||||||||||| || |||||||| | |||| |||| | ||
Sbjct 560 CTCTTCCTCGGAGACATGTCCTGACTACTTCAAG-TGGATCCACCGAGACTTAAAGGTAT 618
Query 350 GGGAAGAGACAGGGATCACAAGGGAAACACTAGAGAGAGCAAAACCAAAAGCTCATTTCA 409
|| || |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 619 GGCAAAAGACAGGGATCACAAGGGAAACACTAGAGAGAGCAAGACCAAATGCTCACTTCA 678
Query 410 GGCTAGTGATTAAGTCAGGGAGATTGTATGTTCATCAGTACGACAAGGC-TTATGAGTCA 468
|| ||||||| ||||||||||||||||| |||||||| ||||| || || || | || ||
Sbjct 679 GGATAGTGATAAAGTCAGGGAGATTGTACGTTCATCAATACGAGAAAGCATT-TCAGACA 737
Query 469 AGAGATGT-TCTCACAATCTGGGGGATACTTCAGCTTCTAAGAATGTATCCTGGTCAAGT 527
|||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 738 AGAGATGTGT-TCACAATCTGGGGAATACTTCAGCTTCTAAGGATGTATCCTGGTCAAAT 796
Query 528 CCCTGATCTTGAGCTTCTCTTCTTCTGTCATGATAAACCCGCTATTTGGAAACGAGACTT 587
|||||| ||||||||||||||| |||| ||||||| |||||| ||||||||| |||||||
Sbjct 797 CCCTGACCTTGAGCTTCTCTTCCTCTGCCATGATAGACCCGCCATTTGGAAAAGAGACTT 856
Query 588 TAGGCAACCACAACCAAATGCCACGTGGCCTCCTCCACCGTTGTTTCAGTACTGTGGTCA 647
| | || | ||| ||| | |||||||||||||| ||||||||||| |||||||||||
Sbjct 857 GAAGAAA--A-AACGAAAGGATACGTGGCCTCCTCCGCCGTTGTTTCACTACTGTGGTCA 913
Query 648 CCGTGAAGCCTACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGG 692
|||||| || |||| ||| ||||||||||||||||||||||||||
Sbjct 914 CCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGG 958
> AT2G45840.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr2:18869261-18871561 FORWARD LENGTH=1671
Length=1671
Score = 200 bits (108), Expect = 1e-50
Identities = 310/405 (77%), Gaps = 23/405 (6%)
Strand=Plus/Plus
Query 304 ACTTGTCCTGACTACTTCAGATGGATCCAACAA-GACCTAAAAGCATGG-GAAGAGACAG 361
|||||||| ||||||||||| ||||||| |||| || || |||||||| | ||||| |
Sbjct 377 ACTTGTCCAGACTACTTCAGGTGGATCC-ACAAGGATCTTGAAGCATGGCG-TGAGACTG 434
Query 362 GGATCACAAGGGAAACACTAGAGAGAGCAAAACCA-AAAGCTCATTTCAGGCTAG-TGAT 419
| ||||| | || || |||||||||| || | |||||||| ||| |||| | | ||
Sbjct 435 GAATCACTCGAGAGACGTTAGAGAGAGC-AAGTGATAAAGCTCACTTCCGGCT-GATAAT 492
Query 420 -TAAGTCAGGGAGATTGTATGTTCATCAGTACGACAAGGCTTATGAGTCAAGAGATGTTC 478
||| ||| ||| ||||||| ||||| ||| | || ||| | || |||||||||||
Sbjct 493 AAAAG-GAGGAAGAGTGTATGTGCATCAATACAAGAAATCTTTTCAGACAAGAGATGTTT 551
Query 479 TCACAATCTGGGGGATACTTCAGCTTCTAAGAATGTATCCTGGTCAAGTCCCTGATCTTG 538
|||| || ||||| ||| | ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 552 TCACTATATGGGGAATAGTACAGCTGCTAAGGATGTATCCTGGTCAAGTCCCTGATCTTG 611
Query 539 AGCTTCTCTTCTTCTGTCATGA-TAAACCCGCTATTTGGA-AACGAGACTTTAGGC-AA- 594
||||||||||| | || ||||| | | || | || |||| || |||||| ||||| ||
Sbjct 612 AGCTTCTCTTCATGTGCCATGACTCA-CCTGAAATCTGGAGAA-GAGACTATAGGCCAAG 669
Query 595 -CCACAAC-CAAATGCCACGTGGCCTCCTCCACCGTTGTTTCAGTACTGTGGTCA--CCG 650
||| | ||| || |||||||| ||||| || | || || || ||||| || |||
Sbjct 670 ACCAGGAGTCAA-TGTGACGTGGCCACCTCCTCCACTCTTCCACTATTGTGGACATTCCG 728
Query 651 TGAAGCCTACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGGCTG 695
| || | || ||| || |||||||| |||||||| ||||||||
Sbjct 729 -GT-GCTTTCGACATTGTCTTCCCTGACTGGAGCTTTTGGGGCTG 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35465307782
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5