BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939174
Length=2186
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61340.1 | Symbols: | F-box and associated interaction doma... 1812 0.0
AT2G31470.1 | Symbols: DOR | F-box and associated interaction d... 104 4e-21
AT2G16220.1 | Symbols: | F-box and associated interaction doma... 58.4 3e-07
> AT3G61340.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:22701079-22702481 REVERSE LENGTH=1403
Length=1403
Score = 1812 bits (981), Expect = 0.0
Identities = 1160/1244 (93%), Gaps = 21/1244 (2%)
Strand=Plus/Plus
Query 1 AGAGAAGCCGCCTCCACCATGATGACACGGCGCAAGAAACGATCTTGTTCGAATCCAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 17 AGAGAAGCCGCCTCCACCATGATGACACGGCGCAAGAAACGATCTTGTTCGAATCAAAAG 76
Query 61 AAAGAAGAAGTAGTGAAATCCGAACCGATCCCGTTCGATCTCGTAATCGAGATACTCTTG 120
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 77 AAAGAAGAAG-A--GAAATCCGAACGGATCCCGTTCGATCTCGTAATCGAGATACTCTTG 133
Query 121 AGATTGCCTG-CGAAGTCTATAGCAAGATTTCGTTACGTGTCGAAGCTATGGCAGTCCAC 179
|||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 134 AGATTGCCTGTC-AAGTCTATAGCTAGATTTCGTTACGTATCGAAGCTATGGCAGTCCAC 192
Query 180 ATTGCGAGGTCCA-CATTTCACCGAGTCCTTCTTGACCTTATCTTCGTCTCGTCCGAAGA 238
|||||||||| || |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 193 ATTGCGAGGT-CAGCATTTCACCGAGTCCTACTTGACCATATCTTCGTCTCGTCCGAAGA 251
Query 239 TATTGTTCACTTGCCTAAAAGACGGTGAAACGTTCTTCTTCTCATCACCACATCCTCAAG 298
| ||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 252 TCTTGTTTACATGCCTAAAAGACTGCGAAACGTTCTTCTTCTCATCACCACATCCTCAAG 311
Query 299 ATCTGTCTCCTATATCCGCCAATATT-CATATGAGTTTCCCAG-TTAACTGTCCCTCTAA 356
|||||||||||||| |||| ||| || |||||||||||||| | ||| ||||||||||||
Sbjct 312 ATCTGTCTCCTATAGCCGCAAAT-TTGCATATGAGTTTCCC-GATTAGCTGTCCCTCTAA 369
Query 357 TATTTGTCGTCCTGTTCATGGCTGGGTATGTGGTTCACATCAACGAACTACAAAGGGAAC 416
||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 370 TATTTGTCGTCCTGTTCGTGGCTGGTTATGTGGTTTACATCAACGAACTACAAAGGGAAC 429
Query 417 GACGGTTACGGTTCCATTGATATGTAACCCCAGCACAGGGGAATCTTTGGCCTTATGCAA 476
||||||||| | ||||||||||||||||| |||||||||||||| ||| |||| | ||
Sbjct 430 GACGGTTACTGAGCCATTGATATGTAACCCTAGCACAGGGGAATCCGTGGTCTTACGTAA 489
Query 477 AGTGAAAACAAGGAGGAAGGGAGTGATAAGCTTTTTGGGGTTTGATCCGATCGACAAAAA 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AGTGAAAACAAGGAGGAAAGGAGTGATAAGCTTTTTGGGGTTTGATCCGATCGACAAAAA 549
Query 537 GTTCAAAGTATTGTGCATGACGCGGGCATATGTAGGACGAGCTGATTCTGAAGAGCATCA 596
||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 550 TTTCAAAGTATTATGCATGACGCGTTCATGTATAGGACGAGCTGATTCTGAAGAGCATCA 609
Query 597 AGTTCTCACGTTAGAAACCGGGAAGAAACCGTCAAGGAAAATGATCGAATGTGACATACT 656
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 AGTTCACACGTTAGAAACCGGGAAGAAACCGTCAAGGAAAATGATCGAATGTGACATACT 669
Query 657 ACATTATCCTACTGTTGTGGAGCATACTAATGGCTTTTCTCAATATGATGGGGTATGCAT 716
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACATTATCCTGTTCCTGTGGAGCATACTAATGGCTTTTCTCAATATGATGGGGTATGCAT 729
Query 717 CAATGGTGTTTTGTATTACTTAGCCATTGTCCATGGTGTTTCTGACCACAGGTATCCTGA 776
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 730 CAATGGTGTTTTGTATTACTTAGCCATTGTCCATGGTGTTTCTGACGACAGGTATCCTGA 789
Query 777 TGTAGTATGCTTTGAGTTTAGATCTGATAAATTCAATTATATCAAGAAAGTTGCTGATCA 836
||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||
Sbjct 790 TGTAGTATGCTTTGAGTTTGGATCTGACAAATTCAAATATATCAAGAAAGTTGCTGGTCA 849
Query 837 TGGCATGGAAAT---GTACTTGAGA-GGACAGCTTGA-TTCAACTCTGGTAAACTACAAG 891
|| ||||||||| ||||||| || || | ||| || ||||| ||| ||||||||||||
Sbjct 850 TGACATGGAAATATTGTACTTGGGAAGG-CGGCT-GAATTCAATTCTAGTAAACTACAAG 907
Query 892 GGTAAATTAGCTAAGCTTCAGCCCAACATGTCTAACAATGGAGTATGCACCGGTATTCAA 951
|||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 908 GGTAAATTAGCTAAGCTTCAGCCCAACATGCCTAACAACG---TATGCACCGGTATTCAA 964
Query 952 CTATGGGTTCTTGAAGACGCCGAGAAACACGAATGGTCGAGTCATATCTACGTTTTGCCT 1011
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 965 CTATGGGTTCTTGAAGACGCGGAGAAACACGAATGGTCAAGTCATATCTACGTTTTGCCT 1024
Query 1012 CCTCCGTGGAGGAATGTATATGAAGAGACCAAGTTATGTTTTGTTGGAACGACTCGTAAA 1071
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1025 CCTCCGTGGAGGAATGTATATGAAGAGACCAAGTTATGTTTCGTTGGAACGACTCGTAAA 1084
Query 1072 GGTGAAATTGTGTTGTCCCCAAACACTATATCCAACTTTTTCTACCTTCTCTACTACAAT 1131
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1085 GGTGAAATTGTGTTGTCCCCAAACACTATATCCGACTTTTTCTACCTTCTCTATTACAAT 1144
Query 1132 CCCGAGAGGAACACTATCACTATAGTTAAAATCAAAGGATTGGAAACCTTTAAGAGTCAT 1191
||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1145 CCCGATAGGAACACTATCACTATAGTTAAAATCAAAGGAATGGAAACTTTTCAGAGTCAC 1204
Query 1192 AAAGCTTACACCTTTGTTGACCATTTAGAGGATGTGAAGCTTGT 1235
||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 1205 AAAGCTTACACCTTTCTTGACCATTTAGAGGATGTTAACCTTGT 1248
> AT2G31470.1 | Symbols: DOR | F-box and associated interaction
domains-containing protein | chr2:13407492-13408655 REVERSE
LENGTH=1164
Length=1164
Score = 104 bits (56), Expect = 4e-21
Identities = 101/122 (83%), Gaps = 6/122 (5%)
Strand=Plus/Plus
Query 2019 TTTCTACCTTTCCTACTACAATCCCGAGAGTAATACTCTCACAAGGGTTAG-AATCCAAG 2077
|||||| ||| |||||||||| ||||| |||||| ||| ||| ||| | ||||||||
Sbjct 1035 TTTCTATGTTTTCTACTACAATTTGGAGAGGAATACTATCAGAAGAGTT-GAAATCCAAG 1093
Query 2078 GAATGGAAGCTTTTAAGG--AACGTAAAGTTTACATCTTTCTAGACCATGTAGAGGATTT 2135
|||||| ||| ||||||| || | ||| |||||||||||||||||||||||||||| |
Sbjct 1094 GAATGGGAGCGTTTAAGGTTAA--TGAAGATTACATCTTTCTAGACCATGTAGAGGATGT 1151
Query 2136 GA 2137
||
Sbjct 1152 GA 1153
> AT2G16220.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7030155-7031378 REVERSE LENGTH=1224
Length=1224
Score = 58.4 bits (31), Expect = 3e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 706 GGGGTATGCATCAATGGTGTTTTGTATTACTTAG 739
||| ||||||||||||||||||||||||||||||
Sbjct 607 GGGATATGCATCAATGGTGTTTTGTATTACTTAG 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108433177200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5