BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939176
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2346 0.0
> AT3G61360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22704304-22706138 REVERSE LENGTH=1835
Length=1835
Score = 2346 bits (1270), Expect = 0.0
Identities = 1446/1530 (95%), Gaps = 15/1530 (1%)
Strand=Plus/Plus
Query 12 GAGAGAAAAATGCTTAAGAAGATCTCCTCCGATTCGTATCGTCGTCTTCTTGCTCCGGTA 71
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 4 GAGAGAAAAATGCTTCAGAAGATCTCCTCCGATTCGTATCGTCGTCTTCTTGCTCCAGTA 63
Query 72 CTCTCTTCGTCTTCATCTTTATCATCTACATCGAGAAACAGAACAGAGATCGAACTTATC 131
|| || || ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 64 CTATCATCATCTTCATCTTTATCATCTACATCGATAAACAGAACAGAGATCGAACGTATT 123
Query 132 ACAAGGATCATCAATGATCATCCATTCCCAAATCATCCAATTCAACCAATTTTCACCAAG 191
|||| |||||||||| ||||||||||||||||||||| |||||||| ||| || ||||
Sbjct 124 ACAATAATCATCAATGGTCATCCATTCCCAAATCATCCGATTCAACCCATTCTCGCCAAA 183
Query 192 CACATCCCTTTGTCTTCTCTATCACCGGAATTTGTATCAGAAGTTCTCGG-CAGTCTCTT 250
||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 184 CACATCCCTTTATCTTCTCTGTCACCGGAATTTGTATCAGAAGTTCTCGGTC-GTCTCTT 242
Query 251 CGCTGCTCATTCCAATGGCCTCAAAGCTCTCGAATTCTTCAAGTATTCCCTTAAAAGCTC 310
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 243 CGCTGCTCATTCCAATGGCCTTAAAGCTCTCGAATTCTTCAAGTATTCACTTAAAAGCTC 302
Query 311 TAACTCTTCTCCAACCTCTGATTCCTTCGAGAAAACACTTCACATTCTCGCACGGATGCG 370
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TAAATCTTCTCCCACCTCTGATTCCTTCGAGAAAACACTTCACATTCTCGCACGGATGCG 362
Query 371 TTATTTCGATCAAGCTTGGGCTTTAATGGCGGAAATAAGAAAAGATTATCCTGATTTGTT 430
|||||||||||||||||||||||||||||||||| | ||||||| || ||| |||||||
Sbjct 363 TTATTTCGATCAAGCTTGGGCTTTAATGGCGGAAGTGCGAAAAGACTACCCTAATTTGTT 422
Query 431 GAGTTTCAAGTCTATGAGCATCA-TTCTCTGCAAAATCGCTAAATTTGGGTCTTATGAAG 489
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 423 GAGTTTCAAGTCCATGAGCAT-ACTTCTCTGCAAAATCGCTAAATTTGGGTCTTATGAAG 481
Query 490 AAACTTTAGAAGCGTTCGTGAAGATGGAGAAAGAGATATTCAGAAAGAAATTTGGTGTCG 549
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AAACTCTAGAAGCTTTCGTGAAGATGGAGAAAGAGATATTCAGAAAGAAATTTGGTGTCG 541
Query 550 ATGAGTTCAATATTCTTCTGCGAGCATTTTGCACAGAGCGAGAGATGAAGGAAGCGAGAT 609
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 ATGAGTTCAATATTCTTCTACGAGCGTTTTGCACAGAGCGAGAGATGAAGGAAGCGAGAT 601
Query 610 CAATTTTCGAAAAATTGCATTC-CAGGTTTAAGCCAGATGTCAAGACGATGAACATTTTA 668
|||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||||||
Sbjct 602 CAATTTTCGAAAAATTGCATTCTC-GGTTTAACCCAGATGTGAAGACGATGAACATTTTA 660
Query 669 CTGT-TAGGGTTTAAGGAAGCTGGTGATATTACGGCCACGGAGTTGTTCTATCATGAAAT 727
|| | ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 661 CT-TCTAGGGTTTAAGGAAGCTGGTGATGTTACGGCCACGGAGCTGTTTTATCATGAAAT 719
Query 728 GGTGAAACGAGGATTCAAACCTAATTCCGTAACTTACGGTATCAGAATCGATGGGTTCTG 787
||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 720 GGTGAAACGAGGATTTAAACCAAATTCCGTCACTTACGGTATCAGAATTGATGGGTTCTG 779
Query 788 CAAAAAACGAAACTTTGGGGAAGCTTTGAGGCTCTTTGAAGATATGGATCGTCAAGATAT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 780 CAAAAAACGAAACTTTGGGGAAGCTTTGAGGCTCTTTGAAGATATGGATCGTCTAGAT-T 838
Query 848 TT-ATATCACAGTACAGATACTCACTACATTGATTCATGGGTCTGGTGTTGTTCGGAACA 906
|| ||||||| ||||||||||||||||||||||| |||||||||||||| | | ||||||
Sbjct 839 TTGATATCACGGTACAGATACTCACTACATTGATCCATGGGTCTGGTGTAGCTAGGAACA 898
Query 907 AGATCAAAGCACGCCAACTGTTCGATGAAATTCCCAAGAGAGGTTTAACACCTGATTGCG 966
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 899 AGATCAAAGCACGCCAACTGTTCGATGAAATTTCCAAGAGAGGTTTAACACCTGATTGCG 958
Query 967 GAGCTTATAATGCTTTGATGAGTAGTCTAATGAAGTGTGGAGATGTGAGTGGTGCAATCA 1026
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 GAGCTTATAATGCTTTGATGAGTAGTCTAATGAAGTGTGGAGATGTGAGTGGTGCAATTA 1018
Query 1027 AGGTGATGAAAGAGATGGAAGAGAAAGAAATTGAGCCTGACAGTGTAACTTTCCACTCGA 1086
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 AGGTGATGAAGGAGATGGAAGAGAAAGGAATTGAGCCTGACAGTGTAACTTTCCACTCGA 1078
Query 1087 TGTTTATCGGAATGATGAAATCGAAAGAGTTTGGATTCAGCGGGGTATGTGAGTATTACC 1146
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1079 TGTTTATCGGAATGATGAAATCAAAAGAGTTTGGATTCAATGGGGTATGTGAGTATTACC 1138
Query 1147 AGAAAATGAAGGAAAGATCTCTGGTTCCGAAAACACCAACGGTAGTGATGCTGATGAAGC 1206
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 AGAAAATGAAGGAAAGATCTCTGGTTCCGAAAACACCAACTATAGTGATGCTGATGAAGC 1198
Query 1207 TGTTCTGTCAGAACGGTGAAGTCAATTTAGGATTAGACCTTTGGAAGTATATGTTGGAGA 1266
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1199 TGTTCTGTCACAACGGTGAAGTAAATTTAGGATTAGACCTGTGGAAGTATATGTTGGAGA 1258
Query 1267 AAGGATATTGCCCTCATGGCCACGCATTGGAACTCCTCACCACTGCATTGTGTGCTCGAA 1326
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1259 AAGGGTATTGCCCTCATGGCCACGCATTGGAACTCCTTACCACTGCTTTGTGTGCTCGAA 1318
Query 1327 GAAGAGCCAATGATGCATTTGAGTGCTCGA-GGCAAACAGTGGAGAGAGGAAGGTGTGTG 1385
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 1319 GAAGAGCCAATGATGCATTTGAGTGCTC-ATGGCAAACAGTAGAGAGAGGAAGGTGTGTG 1377
Query 1386 AGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGCAACAACGAGTTGAAGAAA 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGCAACAACGAGTTGAAGAAA 1437
Query 1446 CTAGAAGAACTCAAGG-GGAAGATACAAAAACTTCATAGCTTTTTGCCACCTCCTGGAAC 1504
|||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||| ||
Sbjct 1438 CTAGAAGAACTCAAGGAGGA-GATACAAAAACTGCATAGCTTTTTGCCTCCTCCTGAAAT 1496
Query 1505 ACAGCTAATTTAGAAAGTAGCTTCACTGTA 1534
||||||||| ||||| ||||||||||||||
Sbjct 1497 ACAGCTAATGTAGAA-GTAGCTTCACTGTA 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75853023495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5