BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939178
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62060.1 | Symbols: | Pectinacetylesterase family protein |... 1299 0.0
AT2G46930.1 | Symbols: | Pectinacetylesterase family protein |... 732 0.0
AT3G62030.2 | Symbols: ROC4 | rotamase CYP 4 | chr3:22973004-22... 111 1e-23
> AT3G62060.1 | Symbols: | Pectinacetylesterase family protein
| chr3:22979955-22982944 FORWARD LENGTH=1638
Length=1638
Score = 1299 bits (703), Expect = 0.0
Identities = 778/815 (95%), Gaps = 2/815 (0%)
Strand=Plus/Plus
Query 1 TCTTTTCTGGAGTAGAAATTGATGGCGCCTTCGGTTCCAATGGTGCCTCTCACTTTGATT 60
|||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 289 TCTTTTCTGGAGTATAAATTGATGGCGCCTTCGGTTCCAATGATACCTCTCACCTTGATT 348
Query 61 GAGGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGGACGCTACCTGGTTATCATTTA 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 349 CACGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGGACGCTACCTGGTTATCATCTA 408
Query 121 GATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCCTATCCACCTTGAGGGTGGAGGATGG 180
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 409 GATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAGGGTGGAGGATGG 468
Query 181 TGTAACAACCATAGGAGCTGTGTATATCGCAAAACAAGTCCG-CGTGGTTCTTCTAAGTT 239
||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||| ||
Sbjct 469 TGTAACAACCATAGGAGCTGTGTGTATCGCAAAACAAGT-CGACGTGGTTCCTCTAAATT 527
Query 240 CATGGAAAAAGCTTTGCCCTTCACTGGAATATTGAGCAATAAACCTGAAGAGAATCCTGA 299
|||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 528 CATGGAAAAAGCTTTGGCCTTCACTGGAATTTTGAGCAATAGATCTGAAGAGAATCCTGA 587
Query 300 CTTCTTTAATTGGAACAGGATCAAGTTGCGCTACTGTGATGGTGCGTCTTTCTCTGGTGA 359
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 588 CTTCTTTAATTGGAACAGGATCAAGTTGCGTTACTGCGATGGTGCGTCTTTCTCTGGTGA 647
Query 360 TAGTCAGGACGAGAGTTCACAAATTTTCTATCGAGGACAACGAATCTGGCAAGTGGCTAT 419
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 648 TAGTCAGGACGAGAGTTCGCAACTTTTCTATCGAGGACAACGAATCTGGCAAGTGGCTAT 707
Query 420 GGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCAGGCTCTGCTTTCTGGATGTTC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 708 GGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCAGGCTCTGCTCTCTGGATGTTC 767
Query 480 AGCTGGAGGATTAGCTTCCATCTTGCACTGTGATGAGTACAGGGAACTATTACCTAGTTC 539
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 768 AGCTGGAGGATTAGCTTCTATTTTGCACTGTGATGAGTTCAGGGAACTATTACCTAGTTC 827
Query 540 CAGGAAAGTAAAATGCTTAAGTGACGCTGGAATGTTTCTTGACGCAGTGGATGTCTCTGG 599
|| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 828 CACGAAAGTAAAATGCTTAAGTGATGCTGGAATGTTTCTGGACTCAGTGGATGTCTCTGG 887
Query 600 GGGCCACTCGCTTAGGAATATGTTCCAAGGTGTTGTTACAGTGCAGAACCTCCAAAAGGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GGGCCACTCGCTTAGGAATATGTTCCAAGGTGTTGTTACAGTGCAGAACCTCCAAAAGGA 947
Query 660 CTTTTCCAGTACTTGTACAAACCATTTGGATCCTACTTCGTGCTTCTTTCCTCAGAACTT 719
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 948 CTTGTCCAGTACTTGTACAAACCATTTGGATCCTACTTCGTGCTTTTTTCCCCAGAACTT 1007
Query 720 GGTTTCAGACATCAAAACCCCAATGTTTCTTCTCAACACAGCATATGACTCGTGGCAGAT 779
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1008 GGTTTCAGACATTAAAACCCCAATGTTTCTTCTCAACACAGCATATGACTCTTGGCAGAT 1067
Query 780 CCAACAGAGCTTAGCTCCTCCAACTGCTGATCCAG 814
|||| |||||||||||||||| |||||||||||||
Sbjct 1068 CCAAGAGAGCTTAGCTCCTCCTACTGCTGATCCAG 1102
Score = 226 bits (122), Expect = 4e-58
Identities = 157/173 (91%), Gaps = 5/173 (3%)
Strand=Plus/Plus
Query 809 ATC-CAGAT-CAATTCTTCCAACAATTCAGGACCCAAATGGTGCTTGCTGTAAACGCATT 866
||| ||||| |||||||||||| ||||||||| |||||| || ||||||||||| ||||
Sbjct 1149 ATCACAGATCCAATTCTTCCAAGAATTCAGGAATCAAATGCTGTTTGCTGTAAACTCATT 1208
Query 867 CTCAAACTCTGACCAGACCGGCGGTCTTTATATAAACTCTTGCTTTGCGCATAGTCAGAC 926
||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||
Sbjct 1209 CTCAAACTCTGACCAGA---ACGGTCTTTATATAAACTCTTGCTTCGCGCATTGTCAGAC 1265
Query 927 TGAAAGACATGACACTTGGTTTGCTCAAGATTCTCCTCGACTAAACGGAAAGA 979
||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1266 TGAAAGACAGGACACTTGGTTTGCTCAAGATTCTCCTCAACTAAACGGAAAGA 1318
> AT2G46930.1 | Symbols: | Pectinacetylesterase family protein
| chr2:19283519-19286347 FORWARD LENGTH=1614
Length=1614
Score = 732 bits (396), Expect = 0.0
Identities = 652/774 (84%), Gaps = 24/774 (3%)
Strand=Plus/Plus
Query 40 ATGGTGCCTCTCACTTTGATTGAGGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGG 99
||||||||||||||||||||| ||| |||| ||| ||||||||||||||| | |||||
Sbjct 260 ATGGTGCCTCTCACTTTGATTCAGGCTGCTGCCTCCAAAGGAGCTGTGTGCCTGGATGGA 319
Query 100 ACGCTACCTGGTTATCATTTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCCT-AT 158
|| ||||||||||||||| || | | ||||| ||||||||| |||||| | ||| || ||
Sbjct 320 ACACTACCTGGTTATCATCTACACCCTGGTTCTGGATCAGGAGCTAACCGGTGG-CTCAT 378
Query 159 CCACCTTGAGGGTGGAGGATGGTGTAACAAC-CATAGGAGCTGTGTATAT-CGCAAAACA 216
||| || ||||||||||||||||| ||| || | |||||||||| | | | || |||||
Sbjct 379 CCAACTCGAGGGTGGAGGATGGTGCAAC-ACACGTAGGAGCTGTATCT-TCCGGAAAACC 436
Query 217 AGTCCG-CGTGGTTCTTCTAAGTTC--ATGGAAAAAGCTTTGCCCTTCACTGGAATATTG 273
| | || |||||||| || || || ||||| |||| |||| |||||||||||||||||
Sbjct 437 ACT-CGCCGTGGTTCATC-AA-ATCATATGGAGAAAGTTTTGGCCTTCACTGGAATATTG 493
Query 274 AGCAATAAACCTGAA-GAGAATCCTGACTTCTTTAATTGGAACAGGA-TCAAGTTGCGCT 331
||||||||| || || ||||||||||||||||| || ||||||| || |||| ||||| |
Sbjct 494 AGCAATAAATCT-AATGAGAATCCTGACTTCTTCAACTGGAACA-GAGTCAAATTGCGTT 551
Query 332 ACTGTGATGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTTCACAAATTTTCTATC 391
|||| |||||||| |||||| | || ||||||||||| ||||| |||||| ||| ||||
Sbjct 552 ACTGCGATGGTGCCTCTTTCACCGGCGATAGTCAGGATGAGAGCTCACAACTTTACTATA 611
Query 392 GAGGACAACGAATCTGGCAAGT-GGCTATGGAAGAATTCCTGTCTTTAGGCATG-AAGCA 449
|||||||||||||||||| | | |||||||||||| | || ||| ||||||| || |
Sbjct 612 GAGGACAACGAATCTGGC-ATTCAGCTATGGAAGAACTACTCTCTAAAGGCATGCAA-AA 669
Query 450 AGCA-AACCAGGCTCTGCTTTCTGGATGTTCAGCTGGAGGATTAGCTTCCATCTTGCACT 508
|||| || |||||||| |||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 670 AGCAGAA-CAGGCTCTACTTTCTGGATGTTCAGCTGGGGGATTAGCTTCCATCCTACACT 728
Query 509 GTGATGAGTACAGGGAACTATTACCTAGTTCCAGGAAAGTAAAATGCTTAAGTGACGCTG 568
| ||| ||| || ||||||||| || | | | || ||| |||||||||||||| ||||
Sbjct 729 GCGATCAGTTCAAGGAACTATTTCCGGGCACTACGACAGTGAAATGCTTAAGTGATGCTG 788
Query 569 GAATGTTTCTTGACGCAGTGGATGTCTCTGGGGGCCACTCGCTTAGGAATATGTTCCAAG 628
|||||||| | || ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 789 GAATGTTTATGGATGCAGTGGATGTCTCTGGGGGCCACTCGCTCCGGAAAATGTTCCAAG 848
Query 629 GTGTTGTTACAGTGCAGAACCTCCAAAAGGA-CTTTTCCAGTACTTGTACAAACCATTTG 687
||||||||||||| ||||||||||||||||| || | ||| | |||||||||| ||||||
Sbjct 849 GTGTTGTTACAGTACAGAACCTCCAAAAGGAACTGT-CCACTGCTTGTACAAAGCATTTG 907
Query 688 GATCCTACTTCGTGCTTCTTTCCTCAGAACTTGGTTTCAGACATCAAAACCCCAATGTTT 747
||||| ||||||||||||||||| |||||||||||||||| ||| || || |||||||||
Sbjct 908 GATCCAACTTCGTGCTTCTTTCCCCAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTT 967
Query 748 CTTCTCAACACAGCATATGACTCGTGGCAGATCCAACAGAGCTTAGCTCCTCCA 801
|||||||| ||||||||||| | |||||| | ||| |||| |||||||| |||
Sbjct 968 CTTCTCAATGCAGCATATGACGCTTGGCAGGTACAAGAGAGTTTAGCTCCACCA 1021
> AT3G62030.2 | Symbols: ROC4 | rotamase CYP 4 | chr3:22973004-22975378
FORWARD LENGTH=1181
Length=1181
Score = 111 bits (60), Expect = 1e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 1022 GAAGAAATACGGATACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCA 1081
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GAAGAAATACGGGTACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCA 620
Query 1082 ATGAGG 1087
| ||||
Sbjct 621 AGGAGG 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5