BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939179
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1092 0.0
AT3G61370.1 | Symbols: | Protein of unknown function (DUF3245)... 283 3e-75
AT4G07940.1 | Symbols: | Protein of unknown function (DUF3245)... 276 5e-73
> AT3G60980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22565309-22566745 REVERSE LENGTH=1437
Length=1437
Score = 1092 bits (591), Expect = 0.0
Identities = 916/1066 (86%), Gaps = 49/1066 (5%)
Strand=Plus/Plus
Query 16 TAATAATGTCTCAGATCTGCCGCCTCAATCTTCTTGGTCGGCGTTTCTTCGCCGCCATGC 75
|||||||||||| |||| |||||||||| |||||||||||| |||| | ||||| |||
Sbjct 63 TAATAATGTCTCTGATCGGCCGCCTCAA---TCTTGGTCGGCGCTTCTGCACCGCCGTGC 119
Query 76 CAAGCAGA-CCGAAGGAGATAATGTCAAACCCAGATTGCCGTCCC-GC-GCAGCTATGCT 132
|||| ||| | ||| || ||||||||||||||||||||||| ||| | | | |||||||
Sbjct 120 CAAGAAGATCGGAA-GACATAATGTCAAACCCAGATTGCCG-CCCTTCTG-ATCTATGCT 176
Query 133 TGAGAGTCACGTACTTGATCAGATTCGTTGGTGATCTCGACACGGCGGCGAAGTACGCTC 192
|||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 177 TGAGGGTCTCGTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTC 236
Query 193 GTTTGGCTGTTTTCAGCAGCATCAAATCGGAGGCCACAGCAGCAACATGTCAAGCCATCA 252
||||||||||||||| |||||||||||||||| | ||| || ||| ||||||| ||||||
Sbjct 237 GTTTGGCTGTTTTCACCAGCATCAAATCGGAGTCAACAACAACAATATGTCAATCCATCA 296
Query 253 TCGGAGGCATGTTGCAGAATAAAAGGCACGATGACGCTTACGATCTCTACGATTTCTTCT 312
||||||||||||| | | ||||||||| | | |||||||| ||||||||||| |||||||
Sbjct 297 TCGGAGGCATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCT 356
Query 313 TCAATCA-CTTTAAGCTCAGACCCAACAGCCATTGCTGTAACTACATCATCGAATCTCGT 371
||||||| | | || ||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 357 TCAATCAGCAT-AACCTCAGACCCAACAGCCATTGCTGGAACTACATCATCGAATCTGGT 415
Query 372 TTCAAACAAGGT-TTAGTTGACGAAGCTCT-CGGTTTCCACCACCGATCCATCGAAT-CT 428
||| |||||||| || || |||| ||||| | |||||||||||||| |||| ||| |
Sbjct 416 TTCCAACAAGGTCTT-GTCAACGATGCTCTGCA-TTTCCACCACCGATGCATC-AATTCC 472
Query 429 GGT-ATGGTCCACGACTACCCAAGCCAGGATACTTTCAGGGTCTTGACTAAATGGTTAGT 487
||| | ||||||||||||||||||| | ||| |||||||| ||||||||||| |||||||
Sbjct 473 GGTCA-GGTCCACGACTACCCAAGCGACGATTCTTTCAGGATCTTGACTAAAGGGTTAGT 531
Query 488 CCACGCCGGTCGAATGGACCAAGCGGAAGCCTTGCTTAGAGACAGGACAGTCGGTAGGAC 547
|||| ||||||| |||||||||| |||||||| ||||||| |||||||||| | | ||
Sbjct 532 CCACTCCGGTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAAC 591
Query 548 CACCTACCCAGATCACGTGGCGTACAAGAATCTGATTCGCGGGTTTTTGGATCTTGGGGA 607
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 592 CACCTACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAA 651
Query 608 TTT-AGACAAGGCGGATCTAGTCTTGGCCGAATTCAAACGTTTGTTTTCT-ATTGCCCTA 665
||| | | |||||| |||||||||||| |||||||||||| ||||||| | |||||||||
Sbjct 652 TTTTAAA-AAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTTT-TGATTGCCCTA 709
Query 666 TCCGAGACCAAAGATGATT--CA--A---A--CTATGAAAACAGAGTCGCATTTCTGATG 716
||||||||||||||||||| || | | ||||||||||||||||||||| ||||||
Sbjct 710 TCCGAGACCAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATG 769
Query 717 GCCACGTTCATGGAGTACTGGTTTAAGCAAGGTAAAGAGGTGGAAGCTATGGAGTGTTAC 776
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 770 GCCACATTCATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTAC 829
Query 777 AACCTTTGTGTTATAGCAAACAAGTTACCGGTTTGCACAGAAACTGGCAACGCCCTTTTG 836
|||| |||||| || |||||| ||||| |||||| | ||||| || ||||||||||||
Sbjct 830 AACCGCTGTGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTG 889
Query 837 AATGTCCTGCTCAAATACGGTGAGAAAAAACATGCTTGGGCTTTGTACCATGAACTCTTA 896
|| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct 890 AAAGTCCTGCTCAAATACGGTGAAAAAAAAAATGCTTGGGCATTGTACCATGAACTCTTA 949
Query 897 GATAAA---GGTA--G--AA------CA-G-ACCCTGATACCATTAAGATAATGATAGAC 941
|||||| || | | || | | || |||||||||||||||||||| | |||
Sbjct 950 GATAAAAATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGAC 1009
Query 942 GAGTGTTTTGATATGGGTCGATTTAGCGAGGCT-TGGGAGACCTACACCAAGGCTAGTGC 1000
||||| |||||||||||| | ||||| |||||| ||| ||||||||| ||||| || |
Sbjct 1010 GAGTGCTTTGATATGGGTTGGTTTAGTGAGGCTATGG-AGACCTACAAAAAGGCGAGACC 1068
Query 1001 CAAGAACCACTTCCTCAGTGACAGATACAATATTACAAAGTGTTGC 1046
||||||| ||| ||||||||||| ||||| |||||||| || ||||
Sbjct 1069 CAAGAACGACTACCTCAGTGACAAATACATTATTACAAGGTTTTGC 1114
> AT3G61370.1 | Symbols: | Protein of unknown function (DUF3245)
| chr3:22706312-22708509 FORWARD LENGTH=625
Length=625
Score = 283 bits (153), Expect = 3e-75
Identities = 191/210 (91%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 1288 GTAGACCCTCAGATGACCCTCTCGATCAGAAAATACAAGCCAAGCTTGATGCAGGGAGAA 1347
||||||| ||||| |||||||||||||||||| || |||||||| ||| ||||| || ||
Sbjct 300 GTAGACCTTCAGACGACCCTCTCGATCAGAAACTAGAAGCCAAGTTTGCTGCAGTGAAAA 359
Query 1348 GAAAATATGCAAGATCGGTTGCAGAATCCGCTGGTTCTAGTATGAACGCCGGTGATGACA 1407
||||| ||||||||| |||||||||| | ||||||||||||| ||| |||||||||||||
Sbjct 360 GAAAAAATGCAAGATTGGTTGCAGAAGCTGCTGGTTCTAGTAAGAATGCCGGTGATGACA 419
Query 1408 GTGAGGATGATGATGAATCAGAAAGCAAAAGCCAAGCATTCGGCAAGAAAAAGAAAAATA 1467
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 420 GTGAGGATGATGATGAATCAGAAAGCAAAAGCCAAGCATTTGGTAAGAAAAAGAAAAATA 479
Query 1468 CAAGTACGCCTCATTAGAGTCTGTTATGTA 1497
||||||| |||||||||||| ||| |||||
Sbjct 480 CAAGTACTCCTCATTAGAGTTTGTGATGTA 509
> AT4G07940.1 | Symbols: | Protein of unknown function (DUF3245)
| chr4:4792673-4794109 FORWARD LENGTH=420
Length=420
Score = 276 bits (149), Expect = 5e-73
Identities = 181/197 (92%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1288 GTAGACCCTCAGATGACCCTCTCGATCAGAAAATACAAGCCAAGCTTGATGCAGGGAGAA 1347
||||||||||||| |||||||||||||||||| || |||||||| ||| |||||||| ||
Sbjct 224 GTAGACCCTCAGACGACCCTCTCGATCAGAAACTAGAAGCCAAGTTTGCTGCAGGGAAAA 283
Query 1348 GAAAATATGCAAGATCGGTTGCAGAATCCGCTGGTTCTAGTATGAACGCCGGTGATGACA 1407
||||| ||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 284 GAAAAAATGCAAGATTGGTTGCAGAATCTGCTGGTTCTAGTAAGAATGCCGGTGATGACA 343
Query 1408 GTGAGGATGATGATGAATCAGAAAGCAAAAGCCAAGCATTCGGCAAGAAAAAGAAAAATA 1467
|||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 344 ATGAGGATGGTGATGAATCAGAAAGCAAAAGCCAAGCATTTGGTATGAAAAAGAAAAATA 403
Query 1468 CAAGTACGCCTCATTAG 1484
|||||||||||||||||
Sbjct 404 CAAGTACGCCTCATTAG 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74196405510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5