BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939182
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1615 0.0
AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 776 0.0
AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 776 0.0
> AT3G60960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22535706-22538635 FORWARD LENGTH=1513
Length=1513
Score = 1615 bits (874), Expect = 0.0
Identities = 1143/1269 (90%), Gaps = 34/1269 (3%)
Strand=Plus/Plus
Query 2 AACTGAACCCTAA--G-T-AGTCATGTCCCTCCTCCGCCGCATTGTCCGAAATTCGACGG 57
||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1 AACTGAACCCTAAGTGATCAGTCATGTCCCTCCTCCGCCGCATTGTACGAAATTCGACCG 60
Query 58 TATCAAAGGCTG-TCCTGGTTGCGAAGGCGTTCAAGCCTTACCCACTCGGAAGAGATCCT 116
|||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 61 TATCAAAGGCTGTTCC-GGTTGCGAAGGCGTTCATGCCTTACCCACTAGGAAGAGATCCT 119
Query 117 TCCTCACTCCCAAAGCTTGATACGGTCTCCATCAGGGATATCGATGA-CCGCCCAATTTC 175
||||||||||||||||||||| |||| |||||||| |||||||| | ||||||||||||
Sbjct 120 TCCTCACTCCCAAAGCTTGATCCGGTATCCATCAGCTATATCGAT-AGCCGCCCAATTTC 178
Query 176 TCTGCGCTACAGAGTCACGGCGATGATCGAGATGTCTATTCTCGACGAAGCCTCGAAGCT 235
||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 179 TCTGCGCTACAGAGTCAGGGCAATGATCGAGATGTCTAATCTCGACGAAGCCTCGAAGCT 238
Query 236 CTCGCGCCTCGCTGTCTTGGACAAATTTCGAGTCGACGGAGACACCGTATTCATCTGCAA 295
|||||| || ||||||||| || ||||| ||||||| |||||||||| |||||||||||
Sbjct 239 CTCGCGGCTAGCTGTCTTGAACGGATTTCTAGTCGACAGAGACACCGTCTTCATCTGCAA 298
Query 296 TTCCGTAATCGGCGCCATGTGCAGCGCCAAACGGTACGACGATGCCATCTCTCTGTTCAA 355
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTCCGTAATCGGCGCCATGTGTAGCGCCAAACGGTACGACGATGCCATCTCTCTGTTCAA 358
Query 356 TTACTTTTTCAACGAGTCTCAAACTCTCCCAAACGTGCTCTCCTGCAATCTCATCATGAA 415
||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||| ||
Sbjct 359 TTACTTTTTCAACGAGTCTCAGACTCTTCCAAACACGCTCTCCTGCGATCTCATCATCAA 418
Query 416 AGCACACTGCGACCAAGGTCACGTCGATGAAGCTCTTGAGCTCTACCGCCACATTTTGCT 475
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 419 AGCACACTGCGACCAAGGTCACGTCGACGATGCTCTTGAGCTCTACCGTCACATTTTGCT 478
Query 476 CGACGGACGTTTAGTTCCAGGGATCGAGACATACATGATACTCACCAAAGCCTTGGTTGA 535
|||||||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 479 CGACGGACGTGTAGCTCCAGGGATCGAGACATACATGATACTCGCGAAAGCCTTGGTTGA 538
Query 536 CGCCAAAAGATTCGATGAAGCTTGTGATTTAGCGGGATCCATGAGCTCTTGTAGTTTCAT 595
|| |||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||
Sbjct 539 TGCTAAAAGATTCGATGAAGCTTGTGTTTTGGCGAGATCCATGAGCTGTTGTAGTTTCAT 598
Query 596 GGTCTACGACATTCTGATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCA 655
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGTCTACGACATTCTAATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCA 658
Query 656 AATCTTCAAGGAATTGGAAGGACTGGATAGGAAATTTCCATGGAGAGAGTATCACAAGGC 715
||||||| |||||||| ||||||||||||| ||| ||||| ||||||| |||||||||||
Sbjct 659 AATCTTCGAGGAATTGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACAAGGC 718
Query 716 ATTTGCAATTTTTAATGTTTCGTTTGTGAACTATTTTTTCAAGCAAGGTAAAGATGAGGA 775
| |||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 719 AAATGCAATCTTTAATGTTTCGTTTATGAACTATTGGTTCAAGCAAGGCAAAGATGAGGA 778
Query 776 AGCTATGGAGATTCTCGCAACTCTGGAAGATGCTCAAGTACTGAAACCCATTGTCGGAAA 835
|||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||
Sbjct 779 AGCTATGGAGATTCTCGCAAATCTGGAAGATGCTCAAGTGCTGAACCCCATTGTCGGAAA 838
Query 836 TAGGGTTTTAAAAGTTCTTGTGGAGCACGGTAAGAAAACAGAGGCCTGGGAATTGTTTGA 895
|||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct 839 CAGGGTTTTGCAAGTTCTGGTGAAGCACGGTAAAAAAACAGAGGCCTGGGAATTGTTTGG 898
Query 896 AGAGATGATAAAAATCTGTGATTCCGAGAC-GATTGACATAATGTCCGAGTATTTTATTG 954
|||||||||| |||| |||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 899 AGAGATGATAGAAATTTGTGATTCCGAGACTG-TTGACATAATGTCCGAGTATTTTAGTG 957
Query 955 AAAATACTGTACCATTCGAGCGGCTCAGGACAACGTGTTATAGGACGATGATCGCAAGTC 1014
| || |||||||||||||||||||| |||| |||||||||||||| |||||||| ||||
Sbjct 958 AGAAGACTGTACCATTCGAGCGGCTTAGGAAAACGTGTTATAGGAAGATGATCGTGAGTC 1017
Query 1015 TCTGCAAGCATGGAAGAGTGTTGGAGGCCGAGAAA-TACTTCGCAGAGATGTTTACCGAC 1073
||||| ||||||||| ||||| || || |||||| | |||||| ||||||||||||||
Sbjct 1018 TCTGCGAGCATGGAAAAGTGTCAGACGCAGAGAAACT-CTTCGCCGAGATGTTTACCGA- 1075
Query 1074 GCTGAGATATTTACCGACGTTGATGGAGAGGACTTGTTGGTGGGGCCTGACCTTTCAACA 1133
|| | | |||| || || | | |||||||||||||||||||||||| || |
Sbjct 1076 --TG---T-T-----GACG--GA-GG-G-G-ACTTGTTGGTGGGGCCTGACCTTTTAATA 1118
Query 1134 TTCAGAGCAATGATCAATGGATATGTTA-AGGTAGGG-GCAGTCAATGATGCTATCAAGA 1191
|||||||||||||||||||| |||||| || ||||| | ||| |||||||||||||||
Sbjct 1119 TTCAGAGCAATGATCAATGGTTATGTTTCAG-TAGGGAG-AGTGGATGATGCTATCAAGA 1176
Query 1192 CTTTGAACAAGTTGCGGATTTCAAATATTAGAAAGCTTGCTATTCATCGAGCCCCATAAG 1251
| ||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 1177 CCTTGAACAAGATGCGGATTTCAAATCTCAGAAAGCTTGCTATTCATCAAGCCCCATAAG 1236
Query 1252 TTGCATTTG 1260
||| |||||
Sbjct 1237 TTGGATTTG 1245
> AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10314118-10317160 FORWARD LENGTH=1308
Length=1308
Score = 776 bits (420), Expect = 0.0
Identities = 782/948 (82%), Gaps = 59/948 (6%)
Strand=Plus/Plus
Query 328 GGTACGACGATGCCATCTCTCTGTTCAATTACTTTTTCAACGAGTCTCAAACTCTCCCAA 387
|||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 395 GGTACGACGAAGCCATCTCTCTGTTCGATTACTTTTTCAACGAGTCTCAGACTCTCCCAA 454
Query 388 ACGTGCTCTCCTGCAATCTCATCATGAAAGCACACTGCGACCAAGGTCA-CGTCGATGAA 446
|| |||||||||||||||||||||| |||||||||||||||||||| || |||||| |
Sbjct 455 ACATGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACCAAGG-CAGCGTCGACCAC 513
Query 447 GCTCTTGAGCTCTACCGCCACATTTTGCTCGACGG-ACGTTTAGTTCCAGGGATCGAGAC 505
||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 514 GCTCTTGAGCTCTACCGCCACATTTTGCTCGACGGGA-GTTTAGCTCCAGGGATCGAGAC 572
Query 506 ATACATGATACTCACCAAAGCCTTGGTTGACGCCAAAAGATTCGATGAAGCTTGTGATTT 565
|||| |||||| || ||||||||||| | || |||||||| ||||||||||||||| |
Sbjct 573 GTACAGGATACTGACGAAAGCCTTGGTCGGTGCTAAAAGATTAGATGAAGCTTGTGATGT 632
Query 566 AGCGGGATCCATGAGCT-CT-TGTAGTTTCATGGTCTACGACATTCTGATTCGCGGGTT- 622
|| | ||||||||||| || || | |||| || ||||||||||||||||| |||||
Sbjct 633 AGTGAGATCCATGAGCCGCTGTG-A-TTTCGCCGTATACGACATTCTGATTCGAGGGTTT 690
Query 623 CTTGGATATAGGGAATTTCGTAAAGGCTAGCCAAATCTTCAAGGAATTGGAAGGACTGGA 682
|| ||||| ||| || ||||||| |||||||||||||||| |||||||| |||||| | |
Sbjct 691 CT-GGATAAAGGCAAATTCGTAAGGGCTAGCCAAATCTTCGAGGAATTGAAAGGACCGAA 749
Query 683 TAGGAAATTTCCATGGAGAGAGTATCACAAGGC-ATTTGCAATTTTTAATGTTTCGTTTG 741
||| ||| |||||||| || | ||||||||||| ||| ||||| || || |||||||||
Sbjct 750 TAGTAAACTTCCATGGCGAAACTATCACAAGGCGATT-GCAATCTTCAACGTTTCGTTTA 808
Query 742 TGAACTATTTTTTCAAGCAAGGTAAAGATGAGGAAGCTATGGAGATTCTCGCAACTCTGG 801
|| |||| | ||||||||||| ||||| ||||| |||||||||||| |||||||||| |
Sbjct 809 TGGACTACTGGTTCAAGCAAGGCAAAGACGAGGAGGCTATGGAGATTTTCGCAACTCTCG 868
Query 802 AAGATGCTCAAGTACTGAA-ACCCATTGTC-GGAAATAGG-GTTTTAAAAGTTC-TTGTG 857
|| ||||| || | || || ||| ||| || ||||| || ||||| ||| | | |||||
Sbjct 869 AACATGCTGAATTGCTCAACACC-ATT-TCCGGAAAC-GGAGTTTTGAAA-TGCCTTGTG 924
Query 858 GAGCACGGTAAGAAAACAGAGGCCTGGGAATTGTT-TGAAGAGATGATAAAAATCTGTGA 916
|||||||||| |||||||||||||||||||||||| | | || |||||| ||||||||||
Sbjct 925 GAGCACGGTAGGAAAACAGAGGCCTGGGAATTGTTCTTA-GATATGATAGAAATCTGTGA 983
Query 917 TTCCGAGACGATTGACATAAT---GTCCGAGTA---TTTTATT-G---AAAATACTGTAC 966
|||||||||| ||| |||||| |||| || | |||| || | |||| ||| | |
Sbjct 984 TTCCGAGACGGTTGGCATAATAATGTCCAAGGAGGGTTTT-TTCGGCGAAAAGACTATCC 1042
Query 967 CATTCGAGCG-GCTCAGGACAACGTGTTATAGGACGATGATCGCAAGTCTCTGC-AAGCA 1024
| || ||||| | | || | ||||||||||| | ||||||||| ||||||||| || ||
Sbjct 1043 CGTTTGAGCGAG-TGAGAAGAACGTGTTATACCAGGATGATCGCGAGTCTCTGCCAA-CA 1100
Query 1025 TGGAAG-AGTGTTGGAGGCCGAGAAATACTTCGCAGAGATGTTTACCGACGCTGAGATAT 1083
|||| | |||||||||| |||||| || | | || ||||| || | |
Sbjct 1101 AGGAAACA-TGTTGGAGGCAGAGAAA--CT-C-------T-TTG-CCGACA-TG---T-T 1142
Query 1084 TTACCGACGTTGATGGAGAGGACTTGTTGGTGGGGCCTGACCTTTCAACATTCAGAGCAA 1143
| |||||||||| || || |||||||||| || ||||| ||||||||||||||||||
Sbjct 1143 TG-CCGACGTTGACGGTGATGACTTGTTGGCAGGACCTGATGTTTCAACATTCAGAGCAA 1201
Query 1144 TGATCAATGGATATGTTAAGGTAGGG-GCAGTCAATGATGCTATCAAGACTTTGAACAAG 1202
|||||||||| ||||||||||||||| | |||| |||||||||||||||| |||||||||
Sbjct 1202 TGATCAATGGTTATGTTAAGGTAGGGAG-AGTCGATGATGCTATCAAGACCTTGAACAAG 1260
Query 1203 TTGCGGATTTCAAATATTAGAAAGCTTGCTATTCATCGAGCCCCATAA 1250
|| |||||| ||| | ||||||||| ||||||||| |||| |||||
Sbjct 1261 ATGAAGATTTCTAATCTCAGAAAGCTTTCTATTCATCAAGCCACATAA 1308
> AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10338723-10341007 REVERSE LENGTH=1173
Length=1173
Score = 776 bits (420), Expect = 0.0
Identities = 782/948 (82%), Gaps = 59/948 (6%)
Strand=Plus/Plus
Query 328 GGTACGACGATGCCATCTCTCTGTTCAATTACTTTTTCAACGAGTCTCAAACTCTCCCAA 387
|||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 260 GGTACGACGAAGCCATCTCTCTGTTCGATTACTTTTTCAACGAGTCTCAGACTCTCCCAA 319
Query 388 ACGTGCTCTCCTGCAATCTCATCATGAAAGCACACTGCGACCAAGGTCA-CGTCGATGAA 446
|| |||||||||||||||||||||| |||||||||||||||||||| || |||||| |
Sbjct 320 ACATGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACCAAGG-CAGCGTCGACCAC 378
Query 447 GCTCTTGAGCTCTACCGCCACATTTTGCTCGACGG-ACGTTTAGTTCCAGGGATCGAGAC 505
||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 379 GCTCTTGAGCTCTACCGCCACATTTTGCTCGACGGGA-GTTTAGCTCCAGGGATCGAGAC 437
Query 506 ATACATGATACTCACCAAAGCCTTGGTTGACGCCAAAAGATTCGATGAAGCTTGTGATTT 565
|||| |||||| || ||||||||||| | || |||||||| ||||||||||||||| |
Sbjct 438 GTACAGGATACTGACGAAAGCCTTGGTCGGTGCTAAAAGATTAGATGAAGCTTGTGATGT 497
Query 566 AGCGGGATCCATGAGCT-CT-TGTAGTTTCATGGTCTACGACATTCTGATTCGCGGGTT- 622
|| | ||||||||||| || || | |||| || ||||||||||||||||| |||||
Sbjct 498 AGTGAGATCCATGAGCCGCTGTG-A-TTTCGCCGTATACGACATTCTGATTCGAGGGTTT 555
Query 623 CTTGGATATAGGGAATTTCGTAAAGGCTAGCCAAATCTTCAAGGAATTGGAAGGACTGGA 682
|| ||||| ||| || ||||||| |||||||||||||||| |||||||| |||||| | |
Sbjct 556 CT-GGATAAAGGCAAATTCGTAAGGGCTAGCCAAATCTTCGAGGAATTGAAAGGACCGAA 614
Query 683 TAGGAAATTTCCATGGAGAGAGTATCACAAGGC-ATTTGCAATTTTTAATGTTTCGTTTG 741
||| ||| |||||||| || | ||||||||||| ||| ||||| || || |||||||||
Sbjct 615 TAGTAAACTTCCATGGCGAAACTATCACAAGGCGATT-GCAATCTTCAACGTTTCGTTTA 673
Query 742 TGAACTATTTTTTCAAGCAAGGTAAAGATGAGGAAGCTATGGAGATTCTCGCAACTCTGG 801
|| |||| | ||||||||||| ||||| ||||| |||||||||||| |||||||||| |
Sbjct 674 TGGACTACTGGTTCAAGCAAGGCAAAGACGAGGAGGCTATGGAGATTTTCGCAACTCTCG 733
Query 802 AAGATGCTCAAGTACTGAA-ACCCATTGTC-GGAAATAGG-GTTTTAAAAGTTC-TTGTG 857
|| ||||| || | || || ||| ||| || ||||| || ||||| ||| | | |||||
Sbjct 734 AACATGCTGAATTGCTCAACACC-ATT-TCCGGAAAC-GGAGTTTTGAAA-TGCCTTGTG 789
Query 858 GAGCACGGTAAGAAAACAGAGGCCTGGGAATTGTT-TGAAGAGATGATAAAAATCTGTGA 916
|||||||||| |||||||||||||||||||||||| | | || |||||| ||||||||||
Sbjct 790 GAGCACGGTAGGAAAACAGAGGCCTGGGAATTGTTCTTA-GATATGATAGAAATCTGTGA 848
Query 917 TTCCGAGACGATTGACATAAT---GTCCGAGTA---TTTTATT-G---AAAATACTGTAC 966
|||||||||| ||| |||||| |||| || | |||| || | |||| ||| | |
Sbjct 849 TTCCGAGACGGTTGGCATAATAATGTCCAAGGAGGGTTTT-TTCGGCGAAAAGACTATCC 907
Query 967 CATTCGAGCG-GCTCAGGACAACGTGTTATAGGACGATGATCGCAAGTCTCTGC-AAGCA 1024
| || ||||| | | || | ||||||||||| | ||||||||| ||||||||| || ||
Sbjct 908 CGTTTGAGCGAG-TGAGAAGAACGTGTTATACCAGGATGATCGCGAGTCTCTGCCAA-CA 965
Query 1025 TGGAAG-AGTGTTGGAGGCCGAGAAATACTTCGCAGAGATGTTTACCGACGCTGAGATAT 1083
|||| | |||||||||| |||||| || | | || ||||| || | |
Sbjct 966 AGGAAACA-TGTTGGAGGCAGAGAAA--CT-C-------T-TTG-CCGACA-TG---T-T 1007
Query 1084 TTACCGACGTTGATGGAGAGGACTTGTTGGTGGGGCCTGACCTTTCAACATTCAGAGCAA 1143
| |||||||||| || || |||||||||| || ||||| ||||||||||||||||||
Sbjct 1008 TG-CCGACGTTGACGGTGATGACTTGTTGGCAGGACCTGATGTTTCAACATTCAGAGCAA 1066
Query 1144 TGATCAATGGATATGTTAAGGTAGGG-GCAGTCAATGATGCTATCAAGACTTTGAACAAG 1202
|||||||||| ||||||||||||||| | |||| |||||||||||||||| |||||||||
Sbjct 1067 TGATCAATGGTTATGTTAAGGTAGGGAG-AGTCGATGATGCTATCAAGACCTTGAACAAG 1125
Query 1203 TTGCGGATTTCAAATATTAGAAAGCTTGCTATTCATCGAGCCCCATAA 1250
|| |||||| ||| | ||||||||| ||||||||| |||| |||||
Sbjct 1126 ATGAAGATTTCTAATCTCAGAAAGCTTTCTATTCATCAAGCCACATAA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5