BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939208
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61550.1 | Symbols: | RING/U-box superfamily protein | chr3... 1086 0.0
> AT3G61550.1 | Symbols: | RING/U-box superfamily protein | chr3:22776401-22777225
FORWARD LENGTH=825
Length=825
Score = 1086 bits (588), Expect = 0.0
Identities = 654/686 (95%), Gaps = 4/686 (1%)
Strand=Plus/Plus
Query 1 TAACCTCTTTCTTCACCATCAAATGTCAACCG-C-CGC-CGCCGTCTTTCCTCCTCCGCC 57
|||||||||||||||||||||||||||||||| | | | || |||||| |||||||| ||
Sbjct 22 TAACCTCTTTCTTCACCATCAAATGTCAACCGCCACCCTCGTCGTCTTCCCTCCTCCACC 81
Query 58 TCCTGTCCCTATCCCTACCTATATAACTAGCCTCGGCCTTGGCTACTCCATAGCTATAGC 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 82 TCCTGTCCCTATCCCTACCTATATAACTAGCCTCGGCCTTGGCTACTCCATAGCCATAGC 141
Query 118 TCTAGGTTTCCTCGTTCTTATCTCCACAATCATCCTCTCTTCTTACATCTGCTGCCGCGC 177
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 142 TCTAGGTTTCCTCGTTCTTATCTCCACAATCATTCTCTCTTCTTACATCTGTTGCCGCGC 201
Query 178 CTCACGCCTTCGCTTCTCTGCCTCCGCCACAACCGCTAACGCAAACGCATCGTTTAGAGA 237
||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||| ||
Sbjct 202 CTCACGCCTCCGCTTCTCTGCCTCCGCCGCAAACGCAAACGCAAACGCATCGTTTAGCGA 261
Query 238 CCGTAGCGTAATCGTCCCAAGAATCATATTCGTAGCTGAAGACGACGATCTTGAGTCTGG 297
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 CCGTGGCGTTATCGTCCCAAGAATCATATTCGTAGCTGAAGACGACGATCTTGAGTCTGG 321
Query 298 AAACGTCGTCGTTGGAGGACTTGATCATTCAATCATCAACTCTTACCCTAAATTCCATTT 357
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 322 AAACGTCGTCGTTGGAGGTCTTGATCATTCAGTCATCAACTCTTACCCTAAATTCCATTT 381
Query 358 CACTAAAGATATCACCGCCGTCGTCGACGGAGATGGATTTCACGACGGAGAAAGAGGAGA 417
||||||||||||||||||||| || |||| ||||| ||||||||||||||| || ||||
Sbjct 382 CACTAAAGATATCACCGCCGTAGTAAACGGTGATGGGTTTCACGACGGAGAAGGAAGAGA 441
Query 418 TACGACGTGTTCCATCTGTCTATGTGAGTATATGGAAGAAGAGATGTTAAGGATGATGCC 477
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 442 GACGACGTGTTCGATCTGTTTATGTGAGTACATGGAAGAAGAGATGTTAAGGATGATGCC 501
Query 478 TGAGTGTAAACACTACTTCCATGTTTATTGTCTTGACGCTTGGCTTAAGCTCAATGGTTC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TGAGTGTAAACACTACTTCCATGTTTATTGTCTTGACGCTTGGCTTAAGCTCAATGGTTC 561
Query 538 TTGTCCCGTTTGCCGGAATTCTCCACTTCCGACGCCGCAATCTACGCCGCAGTCAACTCC 597
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TTGTCCCGTTTGTCGGAATTCTCCACTTCCGACGCCGCAATCTACGCCGCAGTCAACTCC 621
Query 598 TTTGTCGGAAGTTGTGCCGTTGTCTCAATACGCCGCCGATCGGAGGAGATCCAGAAGATA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TTTGTCGGAAGTTGTGCCGTTGTCTCAATACGCCGCCGATCGGAGGAGATCCAGAAGATA 681
Query 658 AAACATTTCtttttttttGCTCCGTG 683
||||||||||||||||| ||||||||
Sbjct 682 AAACATTTCTTTTTTTT-GCTCCGTG 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5