BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939210
Length=2174
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61570.1 | Symbols: GC3, GDAP1 | GRIP-related ARF-binding do... 3417 0.0
AT2G46180.1 | Symbols: GC4 | golgin candidate 4 | chr2:18967359... 1500 0.0
> AT3G61570.1 | Symbols: GC3, GDAP1 | GRIP-related ARF-binding
domain-containing protein 1 | chr3:22779441-22783834 REVERSE
LENGTH=2527
Length=2527
Score = 3417 bits (1850), Expect = 0.0
Identities = 2066/2170 (95%), Gaps = 16/2170 (1%)
Strand=Plus/Plus
Query 16 AGAGCTATGTGGAGTTCAATTGAGAATTTCAAGGAGAACTTGCACAAGATCGCGCTCGAT 75
||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||
Sbjct 187 AGAGCTATGTGGAGTTCAATTGAGAATATGAAGGCGAACTTGCACAAGATCGTTCTCGAT 246
Query 76 GTGCATGAAGACGATGACGAGGAAGACGATCTCCA-AAGCTACGGTTACGCCAATGGCGT 134
|||||||||||||| || || |||||||||||||| || || |||| ||||||||||||
Sbjct 247 GTGCATGAAGACGACGAAGAAGAAGACGATCTCCACAA-ATATGGTTCCGCCAATGGCGT 305
Query 135 ATCGGAA-TCTGATCGGAGGAACTCCGGTGGTTTCAGGTCC---TCCAGGTCCGCGATCT 190
||| ||| |||||||||||||| ||| ||||||| |||||| || |||| ||||||
Sbjct 306 ATC-GAACTCTGATCGGAGGAATTCCAGTGGTTTTAGGTCCGTTTCGAGGTATTCGATCT 364
Query 191 CCAATGGAATCGAATCGCCTGCTCATCATGAGATTGAGCGGTATAAGGCAGAGATTAAGA 250
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CCAATGGAATTGAATCGCCTGCTCATCATGAGATTGAGCGGTATAAGGCAGAGATTAAGA 424
Query 251 AGCTTCAGGAATCCGAATCAGATATCAAAGCCTTGTCAGTGAATTATGCAGCTCTATTAA 310
||||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 425 AGCTTCAGGAATCAGAATCAGATATCAAAGCCTTATCTGTAAATTATGCAGCTCTCTTAA 484
Query 311 GAGAGAAAGAGGATCAGATTTCAAGATTGAACCAGGACAATGGTTCATTGAAACAATATC 370
|||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||| |||
Sbjct 485 GAGAGAAAGAGGATCAGATTTCCAGATTGAATCAGGAGAATGGCTCTTTGAAACAAAATC 544
Query 371 TGACGTCAACTAGTGCCGCTCTTAAAGAGGCTAGAACCGACATTTCCAGGGGATCAAACA 430
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGACCTCAACTAGTGCCGCTCTTAAAGAGGCTAGAACCGACATTTCCAGGGGATCAAACA 604
Query 431 ACCACGCTATCAAGGGAAACAATGATCAGTCACCCAATAATAGGCTACACAAATCTGTGT 490
|| | |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 605 ACTATGCTATCAAGGGAAACAATGATCAGTCACCC---AATAGGCTACACAAATCTGTTT 661
Query 491 CATATTTAAAAAGTCCAAATCATATGTCAAATGGAAAAGGGAAGGATACCGATTCGTATA 550
| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 662 CGCATTTAAAAAGTCCAAACCATATGTCCAATGGAAAAGGGAAGGATACCGATTCGTTTA 721
Query 551 TAAAGGAAAAGGACCTTGCAGATATGCTAGAAGATAGAACCAAATCAATGGCAGCTGTTC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TAAAGGAAAAGGACCTTGCAGATATGCTAGAAGATAGAACCAAATCAATGGCAGCTGTTC 781
Query 611 AAGCTATGGAACTTGCCAAAGAGCGTGAAAAATTAAGAGATCTGCAGCTATCTCTGCAGG 670
|||||| ||| |||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 782 AAGCTACGGAGCTTGCCAAAGAGCGTGAAAAATTAAGAGATTTTCAGCTATCTCTACAGG 841
Query 671 AGGAGCGGAAAAGGAGTGAATCTTTCAAGGAGGAACTCGAGTCAATGAGGTTAGATAAAA 730
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 842 AGGAGCGGAAAAGGAGTGAATCTTTCAAGGAAGAACTCGAGTCTATGAGGTTAGATAAAA 901
Query 731 ACAAAACCTTCATGGAAATTAGCAAAATGCGTAGTGAATTGGATGCAAAATTACTTGAAA 790
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ACAAAACCTCCATGGAGATTAGCAAAATGCGTAGTGAATTGGATGCAAAATTACTTGAAA 961
Query 791 TCAAACACTTGCAGATGAAGTTGAATGGTCGGGAAAGCCATGCTATTGGAAATGCCATGG 850
|||||||| ||||||||||||||| ||||| ||||||||||||||||||| || |||||
Sbjct 962 TCAAACACCTGCAGATGAAGTTGACTGGTCAGGAAAGCCATGCTATTGGACCTGGCATGG 1021
Query 851 AACATCTAAAAGAAGTTAACAAAGCTCTGGAGAATGAAAACAACGAGCTTAAGTTGAAAC 910
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1022 AACATCTGAAAGAAGTTAACAAAGCTCTGGAGAAGGAAAACAACGAGCTTAAGTTGAAAC 1081
Query 911 GAAGTGAGCTAGAAGCTGCTTTAGAAGAAAGCAGGAAGCCAACCAGTAGCAAAGTCTTCC 970
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1082 GAAGTGAGCTAGAAGCTGCTTTAGAAGAAAGCAGGAAGCTAACCAATAGCAAAGTCTTCC 1141
Query 971 CGGACGCCACAGAGACTCTGACTAGGCATCCTAGTACTTTGGACAAGGAGAAGCCTGAAA 1030
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CGGACGCCACAGAGTCTCTGACTAGGCATCCTAGTACTTTGGACAAGGAGAAGCCTGAAA 1201
Query 1031 GCTTTCCTGGAAAAGAAGAAATGGAGCAATCCCTGCAGAGGTTGGAAATGGATTTGAAGG 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GCTTTCCTGGAAAAGAAGAAATGGAGCAATCCCTGCAGAGGTTGGAAATGGATTTGAAGG 1261
Query 1091 AAACACGACGAGAAAGAGATAAGGCACGGCAAGAATTAAAACGGCTCAAACAGCACTTGC 1150
|||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1262 AAACACAAAGAGAAAGAGATAAGGCACGGCAAGAATTAAAACGACTCAAACAGCACTTGC 1321
Query 1151 TAGAAAAGGAAACAGAGGAGTCTGAGAAAATGGATGAAGATAGCCGACTGATTGAAGAAC 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TAGAAAAGGAAACAGAGGAGTCTGAGAAAATGGATGAAGATAGCCGACTGATTGAAGAAC 1381
Query 1211 TCCGCCAGACTAATGAATATCAAAGGTCTCAGATATCACAGTTGGAGAAAAGTCTTAAGC 1270
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1382 TCCGCCAGACTAATGAATATCAAAGGTCTCAGATATCACACTTGGAGAAAAGTCTTAAGC 1441
Query 1271 AGGCCATCGCGAATCAGGAGGATAACAGATTGAGCAATGACAACCAAATCCGAAAGTTAA 1330
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1442 AGGCCATCTCGAATCAGGAGGATAACAGATTGAGCAATGACAACCAAATCCGAAAATTAA 1501
Query 1331 AGGAGACAGTTGAAGACCTAAATCAAAAACTTACAAATTGTTTGAGAACAATCGAGTCCA 1390
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 AGGACACAGTTGATGACCTAAATCAAAAACTTACAAATTGTTTGAGAACAATCGAGTCCA 1561
Query 1391 AGAATGTTGAAATTTTAAATCTTCAAACTGCTCTAGGCCAGTATTACGCTGAAATCGAAG 1450
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 AGAATGTTGAACTTTTAAATCTTCAAACTGCTCTAGGCCAGTATTACGCTGAAATCGAAG 1621
Query 1451 CTAAGGAGCATTTTGAACGAGAGCTCGTGATGGCTAAAGACGAGTTGATGAAGCTTTCTG 1510
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1622 CTAAGGAGCATTTTGAACGAGAGCTTGCGATGGCTAAAGACGAGTTGATGAAGCTTTCTG 1681
Query 1511 CTCGTTTGAAAGATTCTGATGAGCGGTTAGAGTCATCAAATAAAGAAAAGGAAGATGTCA 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 CTCGTTTGAAAGATTCTGATGAGCGGTTAGAGTCATCAAATAAAGAAAAGGAAGATGTCA 1741
Query 1571 CATCCAAATTGTTGCATGCGGAAAAAGTTGCAGCGGAATGGAAAAACAGAGTAAGCAAGG 1630
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1742 CATCCAAATTATTGCATGCGGAAAAAGTTGCAGCGGAATGGAAAAACAGAGTAACCAAGG 1801
Query 1631 TTGAAGAAGACAATGCAAAAGTACGACGTGTTCTTGAGCAGAGCATGACAAGGCTCAATA 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 TTGAAGAAGACAATGCAAAAGTACGACGTGTTCTTGAGCAGAGCATGACAAGGCTCAATA 1861
Query 1691 GAATGTCAATGGAGTCGGATTATCTTGTTGATAGGCGAATCGTTATCAAATTGCTGGTGA 1750
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1862 GAATGTCAATGGAGTCTGATTATCTTGTTGATAGGCGAATCGTTATTAAATTGCTGGTTA 1921
Query 1751 CATATTTCCAGAAGAATCATAACAAAGAGGTTTTGGACCTCATGGTTCGGATGCTAGGAT 1810
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 CATACTTCCAGAAGAATCATAACAAAGAGGTTTTGGACCTCATGGTTCGGATGCTAGGAT 1981
Query 1811 TCTCAGAGGAAGATAAAGAGCGGATTGGAGCGGCA---CAAGGTGG---TAAAGGTGTTG 1864
| ||||||||||||||||||||||||||||||||| ||||| || |||||| ||||
Sbjct 1982 TTTCAGAGGAAGATAAAGAGCGGATTGGAGCGGCAAAACAAGGAGGAGGTAAAGGAGTTG 2041
Query 1865 TTAGAGGCGTATTGGGCTTTCCGGGTCGCTTTGTCGGCGGAATTTTGGGTGGGAAATCTG 1924
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2042 TTAGAGGCGTATTGGGCTTTCCGGGCCGCTTTGTCGGAGGAATTTTGGGTGGGAAATCTG 2101
Query 1925 CAGAGTCACATGCTAATGCGGCTTCTGATAACCAGTCTTTTGCGGATCTATGGGTTGATT 1984
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2102 CAGAGTTACATGCTAATGCAGCTTCTGATAACCAGTCTTTTGCGGATCTATGGGTCGATT 2161
Query 1985 TCTTACTCAaagacgcggaagagcgagagagaagagaagcagaagaagcagcagcgacta 2044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2162 TCTTACTCAAAGACGCGGAAGAGCGAGAGAGAAGAGAAGCAGAAGAAGCAGCAGCGAGTA 2221
Query 2045 aagccaagcaagattcggagagGACAAGACAAGATGCGGCTTTGTATGATTCAGAGTTCT 2104
||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 2222 AAGCCAAGCAAGATTCGGAGAGGACGAGACAAGAGGCGGCTTTGCATGATTCAGAGTTCT 2281
Query 2105 CTACTGTGCCTCTCAGATCATCTGAGAGTAATCAACGACTCTCGAGATAACTTCCTTAAA 2164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 CTACTGTGCCTCTCAGATCATCTGAGAGTAATCAACGACTCTCGAGATAACTTCCTTAAA 2341
Query 2165 AGATGGTACA 2174
||||||||||
Sbjct 2342 AGATGGTACA 2351
> AT2G46180.1 | Symbols: GC4 | golgin candidate 4 | chr2:18967359-18971350
REVERSE LENGTH=2391
Length=2391
Score = 1500 bits (812), Expect = 0.0
Identities = 1691/2099 (81%), Gaps = 126/2099 (6%)
Strand=Plus/Plus
Query 17 GAGCTATGTGGAGTTCAATTGAGAATTTCAAGGAGAACTTGCACAAGATCGCGCTCGATG 76
|||||||||||||||| ||| ||||| |||||||| ||| ||||||| |||| |||||
Sbjct 86 GAGCTATGTGGAGTTCGGTTGCCAATTTGAAGGAGAATTTGAACAAGATTGCGCACGATG 145
Query 77 TGCATGA--A-GACGATGACGAGGAAGACGATCTCCA-AAGCTACGGTTACGCCAATGGC 132
||||||| | ||||| || || || || ||||| || | || || | | ||||| |
Sbjct 146 TGCATGACGACGACGAAGATGATGATGAAGATCT-CACCATTTATGGGTCCACCAAT-G- 202
Query 133 GTATCGGAATCTGATCGGAGGAACTCCGGTGG-TTTCAGGTCCTCCAGGTC-CGCGATCT 190
| ||| | ||||||||||||| || ||| ||| |||| || ||||| | | ||
Sbjct 203 G---CGGCA-CTGATCGGAGGAATTCTAATGGCTTT-AGGTATTCGAGGTCTC-CAATGG 256
Query 191 CCAATGGAATCGAATCGCCTGCTCATCATGAGATTGAGCGGTATAAGGCAGAGATTAAGA 250
||||||| |||||||||||| | ||| |||||||||| | ||||| |||||||| || |
Sbjct 257 CCAATGGTTTCGAATCGCCTGTTAATCCTGAGATTGAGAGATATAAAGCAGAGATCAACA 316
Query 251 AGCTTCAGGAATCCGAATCAGATATCAAAGC-CTTGTCAGTGAATTATGCAGCTCTATTA 309
||||||| |||| |||||||| |||||||| ||| ||||| |||||||| |||||| ||
Sbjct 317 AGCTTCAAAAATCAGAATCAGAAATCAAAGCTCTT-TCAGTAAATTATGCGGCTCTACTA 375
Query 310 AGAGAGAAAGAGGATCAGATTTCAAGATTGAACCAGGACAATGGTTCATTGAAACA-ATA 368
| ||||||||||||||||||||| |||||||||||||| ||||| || |||||||| | |
Sbjct 376 AAAGAGAAAGAGGATCAGATTTCCAGATTGAACCAGGAGAATGGCTCCTTGAAACAGA-A 434
Query 369 TCTGACGTCAACTAGTGCCGCTCTTAAAGAGGCTAGAACCGA-CATTTCCAGGGGATCAA 427
| |||| ||||||| |||||||||||||||| ||||| || | |||| |||| ||| |
Sbjct 435 TTTGACTTCAACTAATGCCGCTCTTAAAGAGTCTAGATTGGATC-TTTCGAGGGCATCGA 493
Query 428 ACAACCACGCTATCAAGGGAAACAATGATCAGTCACCC-A-A--T-A-ATAG-GCTAC-A 479
|||| | |||||||||||||| |||||| |||||| | | | | | || | | |
Sbjct 494 ACAATAATGCTATCAAGGGAAATGGTGATCATTCACCCAACAGGTCACAAAGATCCCCAA 553
Query 480 CAAATCTGTGTCATATTTAAA--AAGTCCA-AAT--CATATG--TC-AAATGGAAAAGGG 531
| ||| || | | || ||| || | | ||| ||| || || ||| ||| |||
Sbjct 554 CTAAT-TG-GAAAAATCGAAACCAAATGAACAATGGCAT-TGCCTCGAAA-CCAAACGGG 609
Query 532 A-AG-G-AT-A--CCGATTCGTATATAAAGGAAAAGGACCTTGCAGATATGCTAGAAGAT 585
| || | || | |||| ||| ||| ||| |||||||| ||||||| ||||| |||||
Sbjct 610 ACAGAGAATGATTCCGAGTCGCATAAAAAAGAAAAGGAGTTTGCAGAGATGCTTGAAGAG 669
Query 586 AGAACCAAATCAATGGCAGCTGTTCAAGCTATG-GAACTTGCCAAAGAGCGTGAAAAATT 644
||||||| |||||||||| ||| ||| |||| | ||||||| |||||||| |||||| |
Sbjct 670 AGAACCAGATCAATGGCATCTGCTCAGGCTA-GAGAACTTGAGAAAGAGCGAGAAAAA-T 727
Query 645 AAG-AGATCTGCAGCTATCT-CTGCAGGAGGAGCGGAAA-AGGAGTGA-ATCTTTCAAGG 700
|| | |||||||| | | | || ||||||||||||||| | | ||| | |||||||||
Sbjct 728 CAGCAAATCTGCAGAT-TTTACTACAGGAGGAGCGGAAACA-AAATGAGA-CTTTCAAGG 784
Query 701 AGGAACTCGAGTCAATGAGGTTAGATAA-AAACAAAAC-CTTCATGGAAATTAGCAAAAT 758
|||||||| |||| ||||||||||||| || ||||| | ||||||| | || |||| |
Sbjct 785 AGGAACTCCAGTCTCTGAGGTTAGATAAGGAA-AAAACAC-TCATGGAGAGTAACAAAGT 842
Query 759 GCGTAGTGAATTGGATGCAAAATT-ACTTGAAATCAAACACTTGCAGATGAAGTTGAATG 817
||| ||||||||||||||||||| | |||||||| ||| |||||||||||||||||||
Sbjct 843 ACGTCGTGAATTGGATGCAAAATTGGC-TGAAATCAGACAATTGCAGATGAAGTTGAATG 901
Query 818 GTCGGGA-AAGCCATGCTATTGGAAATGCCATG-GAACATCTAAAAGAAGTTAACAAAGC 875
|| |||| || |||||| |||||| | ||| | ||| |||||||||| |||||||||||
Sbjct 902 GTGGGGAGCAG-CATGCTTTTGGAATTTCCA-GAGAAAATCTAAAAGAGGTTAACAAAGC 959
Query 876 TCTGGAGAATGAAAACAACGAGCTTAAGTTGAAACGAAGTGAGCTAGAAGCTGCTTTAGA 935
||||||||| ||||| || ||||||||||||||||||||||| |||| |||||||| ||
Sbjct 960 TCTGGAGAAGGAAAATAATGAGCTTAAGTTGAAACGAAGTGAATTAGAGGCTGCTTTGGA 1019
Query 936 AGAAAG-CAGGAAGCCAACCAGTAGCAAAGTCTTCCCGGACG-CCACAGA-GACTCTGAC 992
|| ||| || |||| |||| ||||| ||| ||||||| | | |||||| || ||| |
Sbjct 1020 AGCAAGCCA-GAAGTCAACAAGTAGGAAACTCTTCCC-AAAGAGCACAGAGGA-TCTTAG 1076
Query 993 TAGGCATCC-TAGTACTTTGGACAAGGAGAA-GCCTGAAAGCTTTCCTGGAAAAGAAGAA 1050
||| || || ||||| ||||||| ||||||| ||| | || ||| ||||| ||||||||
Sbjct 1077 TAGACA-CCTTAGTAGTTTGGACGAGGAGAAGGCC-GGAACCTTCCCTGGGAAAGAAGAT 1134
Query 1051 ATGGAGCAATCCCTGCAGAGGTTGGAAATGGATTTGAAGGAAACACGACGAG-AAAGAGA 1109
||||| |||| |||||||| |||||| ||| ||| ||||| ||||| ||| |||| ||
Sbjct 1135 ATGGAAAAATCTTTGCAGAGGCTGGAAAAGGAGTTGGAGGAAGCACGAAGAGAAAAG-GA 1193
Query 1110 TAAGGCACGGCAAGAATTAAAACGGCTCAAACAGCACTTGCTAGAAAAGGAAACAGAGGA 1169
|||||||||||||||| |||| ||||||||||| ||| || ||||||||||||| |||||
Sbjct 1194 TAAGGCACGGCAAGAACTAAAGCGGCTCAAACAACACCTGTTAGAAAAGGAAACCGAGGA 1253
Query 1170 GTCTGAGAAAATGGATGAAGATAGCCGACTGATTGAAGAACTCCGCCAGACTAATGAATA 1229
|||||||||||||||||||||||| || ||||||| || ||||||||||| ||||||||
Sbjct 1254 GTCTGAGAAAATGGATGAAGATAGTAGATTGATTGACGAGCTCCGCCAGACGAATGAATA 1313
Query 1230 TCAAAGGTCTCAGATATCACA-G-TTGGAGAAAAG-TCTTAAGCAGGCCATCGCGAATCA 1286
|||||||||||||||| | | | || || ||||| ||||| |||| | || || |||||
Sbjct 1314 TCAAAGGTCTCAGATA-C-TAGGTTTAGA-AAAAGCTCTTAGGCAGACAATGGCTAATCA 1370
Query 1287 GGAGG--ATAACAGATTGAGCAATGACAACCAAATCCGAAAGTTAAAGGAG-ACAGTTGA 1343
||||| |||| || | ||||| |||| ||||||| |||| |||| | | | ||||
Sbjct 1371 GGAGGAAATAA-AG-TCGAGCAGTGACCTTGAAATCCGGAAGTCCAAGG-GTATAATTGA 1427
Query 1344 AGACCTAAATCAAAAACTTACAAATTGTTTGAGAACAATCGAGTCCAAGAATGTTGAAAT 1403
|||| |||||||||| || | |||||||||||||| || || ||||| ||||| || |
Sbjct 1428 AGACTTAAATCAAAAGCTGGCGAATTGTTTGAGAACGATAGATTCCAAAAATGTGGAGCT 1487
Query 1404 TTTAAATCTTCAAACTGCTCTAGGCCAGTATTACGCTGAAATCGAAGCTAAGGAGCATTT 1463
||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct 1488 TTTGAATCTTCAAACTGCTCTTGGTCAGTACTACGCTGAAATTGAAGCTAAGGAACATTT 1547
Query 1464 TGAACGAGAGCTCGTG-A-TGGCTAAAGACGAGTTG--ATGAAGCTTTCTGCTCGTTTGA 1519
|||||||||||| || | |||||||||| || || ||||| || || ||||||||||
Sbjct 1548 TGAACGAGAGCT--TGCAGTGGCTAAAGA--AGATGCAATGAAACTCTCAGCTCGTTTGA 1603
Query 1520 AAGAT-TCTGATGAGCGGTTAGAGTCATCAAATAAAGAAAAGGAAGATGTCACATCCAAA 1578
||||| | |||||| | ||||||||||||||| ||||||||||| || ||||||| ||
Sbjct 1604 AAGATGT-TGATGAACAGTTAGAGTCATCAAAGAAAGAAAAGGAGGAAATCACATCGAAG 1662
Query 1579 TTGTTGCATGCGGAAAA-AGTTGCAGCGGAATGGAAAAACAGAGTAAGCAAGGTTGAAGA 1637
| ||||| || ||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1663 GTATTGCACGCAGAAAATA-TTGCAGCAGAATGGAAAAACAGAGTAAGCAAGGTTGAAGA 1721
Query 1638 AGACAATGCAAAAGTACGACGTGTTCTTGAGCAGAGCATGACAAGGCTCAATAGAATGTC 1697
||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1722 TGACAATGCAAAAGTAAGGCGTGTTCTTGAGCAGAGCATGACTAGGCTCAATAGAATGTC 1781
Query 1698 AATGGAGTCGGATTATCTTGTTGATAGGCGAATCGTTATCAAATTGCTGGTGACATATTT 1757
|||||| || |||| ||| ||||||||||| || |||||||| |||||||| || || ||
Sbjct 1782 AATGGACTCTGATTTTCTCGTTGATAGGCGTATTGTTATCAAGTTGCTGGTTACGTACTT 1841
Query 1758 CCAGAAG-AATCATAACAAAGAGGTTTTGGACCTCATGGTTCGGATGCTAGGATTCTCAG 1816
||| ||| ||||| | || |||||| |||||||| |||||||| ||||| |||||||| |
Sbjct 1842 CCA-AAGGAATCACAGCAGAGAGGTGTTGGACCTAATGGTTCGAATGCTTGGATTCTCGG 1900
Query 1817 AGGAAGATAAAGAGCGGATTGGAGCGGCACAA---GGTG-G-----TAAAGGTGTTGTTA 1867
||||||| ||| |||| || ||| ||||||| || | | ||||||||||||||
Sbjct 1901 AGGAAGAAAAACAGCGAATAGGATTGGCACAACAAGGAGCGGCAGGTAAAGGTGTTGTTA 1960
Query 1868 GAGGCGTATTGGGCTTTCCGGGTCGCTTTGTCGGCGGAATTTT-GG-G-TGG-GAAATCT 1923
|||| |||||||| |||||||||||||| ||||| || || || || | ||| | ||
Sbjct 1961 GAGGTGTATTGGGTTTTCCGGGTCGCTTAGTCGGTGGCATCTTAGGCGGTGGCGGTGGCT 2020
Query 1924 GCA---GAGTCACATGCTAATGCGGCTTCTGATAACCAGTCTTTTGCGGATC-TATGGGT 1979
|| || || ||| | ||| |||||| ||||| ||||||||||| || | | |||||
Sbjct 2021 -CACCCGATTCTCATCCAAATATGGCTTCAGATAATCAGTCTTTTGCAGA-CATGTGGGT 2078
Query 1980 TGA-TTTCTTACTCAaagacgcggaagagcgagagagaagagaagcagaagaagcagca 2037
|| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2079 CGAATTTCT-ACTTAAAGACGCGGAAGAGCGAGAGAGAAGAGAAGCAGAAGATGCAGCA 2136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107830770660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5