BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939211

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61571.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   159    1e-38


> AT3G61571.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:22784021-22784182 
REVERSE LENGTH=162
Length=162

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 136/160 (85%), Gaps = 3/160 (2%)
 Strand=Plus/Plus

Query  240  CAGTTGGCCTATTTCCCAGTTTCTTCGCAGCGACTTGCCCAGTAAAATCAACAACTTCTT  299
            |||||||||||||||||||||||||||||| ||| | || |||  |||| ||||||||||
Sbjct  6    CAGTTGGCCTATTTCCCAGTTTCTTCGCAGTGACATACCAAGTCGAATCTACAACTTCTT  65

Query  300  CAAAAGATTACCACCGACCAACGAAGAGCTCGACTTGCCCAGTAAAATCAACAACTACTT  359
            |||||| || || | |||||| | |||||| ||||| || ||| |||||||||||| |||
Sbjct  66   CAAAAGTTTGCCGCTGACCAAGGCAGAGCTAGACTTTCCAAGTGAAATCAACAACTTCTT  125

Query  360  CACAAGACTGCCGCCGACCAACGAAGAGCTCATGTCCTGA  399
            |||||   |||| ||||||| |||||||| ||||||||||
Sbjct  126  CACAA---TGCCTCCGACCATCGAAGAGCACATGTCCTGA  162



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5