BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939214

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66810.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: CTLH, C-t...   233    4e-61
  AT2G14430.1 | Symbols:  | transposable element gene | chr2:6134...  82.4    2e-15


> AT5G66810.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: CTLH, C-terminal 
LisH motif (InterPro:IPR006595); BEST Arabidopsis 
thaliana protein match is: LisH and RanBPM domains containing 
protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins 
in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; 
Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 
(source: NCBI BLink). | chr5:26672926-26676613 FORWARD LENGTH=2416
Length=2416

 Score =  233 bits (126),  Expect = 4e-61
 Identities = 152/165 (92%), Gaps = 0/165 (0%)
 Strand=Plus/Minus

Query  3    GGAGGCAAAATAGAATACGATGATCATCGAGGACGAAAGGAGCGTAGGAGCAAAGGATGT  62
            |||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||| || |
Sbjct  460  GGAGGCGAAATAGAATCCGATGATCATCGAGGACGAAAGGAGCGTGGGAGCGAAGAATAT  401

Query  63   CGATGGCGGTCTCAATGTCACCGTATTCAAGCGAGTTTCGGATCCGGCGAATGATCAATC  122
            |||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct  400  CGATGGCGGTTTCAATGTCACCGGATTCAATCGAGCTTCGGATCCGGCGAATGATCAATC  341

Query  123  TGGAGTGATaagaagaagagggaatagaaggacaggaagaagaag  167
            ||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct  340  TGGAGTGATAAGAAGAAGAGGAAATAGAAGGAGATGAAGAAGAAG  296


> AT2G14430.1 | Symbols:  | transposable element gene | chr2:6134010-6139121 
FORWARD LENGTH=5112
Length=5112

 Score = 82.4 bits (44),  Expect = 2e-15
 Identities = 51/54 (94%), Gaps = 2/54 (4%)
 Strand=Plus/Plus

Query  76    AATGTCACC-GTATTCAAGCGAGTTTCGGATCCGGCGAATGATCAATCTGGAGT  128
             ||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct  5060  AATGTCACCAG-ATTCAATCGAGTTTCGGATCCGGCGAATGATCAATCTGGAGT  5112



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10204353047


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5