BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939220

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61640.1 | Symbols: AGP20, AtAGP20 | arabinogalactan protein...   303    3e-82


> AT3G61640.1 | Symbols: AGP20, AtAGP20 | arabinogalactan protein 
20 | chr3:22810041-22810747 REVERSE LENGTH=585
Length=585

 Score =  303 bits (164),  Expect = 3e-82
 Identities = 183/192 (95%), Gaps = 1/192 (1%)
 Strand=Plus/Plus

Query  27   TCCGTTGCCGTAATCGCCTTCTTCGCTTTCGTTTTCGCCGCCATCTCTCCATTCGCCGGC  86
            ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct  134  TCCGTTGCCGTAATCGCTTTATTCGCTTTCGTTTTCGCCGTCATCTCTCCATTCGCCGGC  193

Query  87   GCTCAATCCTCAGCTCCTGCTCCTTCTCCCGCAAGCGACGGAACATCGATTGATCAAGGA  146
            |||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct  194  GCTCAATCCTTAGCTCCTGCTCCTTCCCCCACTAGCGACGGAACATCGATTGATCAAGGA  253

Query  147  ATCGCGTATTTGCTAATGGTGGTGGCGTTGGTGCTGACGTATCTCATCCATCCTCTTGAT  206
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  254  ATCGCGTATTTGCTAATGGTGGTGGCGTTGGTGCTGACGTATCTCATTCATCCTCTTGAT  313

Query  207  GCATCCTTCTTC  218
            ||||| ||||||
Sbjct  314  GCATC-TTCTTC  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10908101533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5