BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939227

Length=1031
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61570.1 | Symbols: GC3, GDAP1 | GRIP-related ARF-binding do...   222    5e-57


> AT3G61570.1 | Symbols: GC3, GDAP1 | GRIP-related ARF-binding 
domain-containing protein 1 | chr3:22779441-22783834 REVERSE 
LENGTH=2527
Length=2527

 Score =  222 bits (120),  Expect = 5e-57
 Identities = 144/156 (92%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  419   GGAAAAGGAGTGAATCTTTCGAGGAGGAACTCGAGTCTCTGAGGTTAGATAAGAACAGAA  478
             |||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||| ||
Sbjct  848   GGAAAAGGAGTGAATCTTTCAAGGAAGAACTCGAGTCTATGAGGTTAGATAAAAACAAAA  907

Query  479   CCTCCATGGAAATTAGCCAAATGCGTAGTGAATTGGATGCAAAATTACTTGAATTCAAAC  538
             |||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  908   CCTCCATGGAGATTAGCAAAATGCGTAGTGAATTGGATGCAAAATTACTTGAAATCAAAC  967

Query  539   ACTTGCAGATGAAGTTGAATGGTCGGGACAGCCATG  574
             || ||||||||||||||| ||||| ||| |||||||
Sbjct  968   ACCTGCAGATGAAGTTGACTGGTCAGGAAAGCCATG  1003


 Score = 89.8 bits (48),  Expect = 5e-17
 Identities = 52/54 (96%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  356  AGAAGATAGAAGCAAATCAATGGCAGCTGTTCAAGCTACGGAGCTTGCAAAAGA  409
            ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct  750  AGAAGATAGAACCAAATCAATGGCAGCTGTTCAAGCTACGGAGCTTGCCAAAGA  803


 Score = 62.1 bits (33),  Expect = 1e-08
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  301  AAAGAGGCTAGAACCGACATTTCCAGGGGATCA  333
            |||||||||||||||||||||||||||||||||
Sbjct  568  AAAGAGGCTAGAACCGACATTTCCAGGGGATCA  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50535551882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5