BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939228

Length=932
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61670.1 | Symbols:  | Protein of unknown function (DUF3133)...   994    0.0  
  AT5G06580.1 | Symbols:  | FAD-linked oxidases family protein | ...   261    9e-69


> AT3G61670.1 | Symbols:  | Protein of unknown function (DUF3133) 
| chr3:22818589-22822020 FORWARD LENGTH=2873
Length=2873

 Score =  994 bits (538),  Expect = 0.0
 Identities = 617/652 (95%), Gaps = 18/652 (3%)
 Strand=Plus/Plus

Query  245   TTCTGATGACTATGATCTTCTTGGTTATGTGTTTCATTCGTTGGATGATGAACCAAGAGA  304
             |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  1811  TTCTGATGACTATGATCTTCTTGGTTATGTATTTCACTCGTTGGATGATGAACCAAGAGA  1870

Query  305   TCTTCCGGGATTGATTTCAGACAAGTCTCAAGATATGCAACACGTTCATTCTCATTTCGC  364
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1871  TCTTCCGGGATTGATTTCAGACAAGTCTCAAGATATGCAACACGTTCATTCTCATTCCGC  1930

Query  365   CAGCCTTTCCAAGGGCGAGCTAAGCTCAGACAGTCTAACAGCTAAGCCACTAGCTCAAGC  424
             |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  1931  CAGCCTTTCCGAGGGAGAGCTAAGCTCAGACAGTCTAACCGCTAAGCCACTAGCTGAAGC  1990

Query  425   TCAAGATTCGCCTCTTCAAGATAACTTTGTTGATTACTCTTCGATCAATCACGACCGGTC  484
             ||   |  ||        | | ||||||||||||||||||||||||||||| ||||||||
Sbjct  1991  TC---A--CG--------A-A-AACTTTGTTGATTACTCTTCGATCAATCATGACCGGTC  2035

Query  485   TGGAGCAGGCAGCCGTAGCTCTCGTTCAGAACACGACAAGGTCACACTGAGCAAGACGAC  544
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  2036  TGGAGCAGGCAGCCGTAGCTCTCGTTCAGAACACGACAAGGTCACACTGAGCAAGGCAAC  2095

Query  545   AGCTATGAGACAGAACTCCTCCATAAAAGAGGTTTCACTTGCAAGTGAGATGGAAGTTAA  604
             ||| |||||||||||   |||||| |||||||||||||||||||||||||||||||||||
Sbjct  2096  AGCCATGAGACAGAA---CTCCATGAAAGAGGTTTCACTTGCAAGTGAGATGGAAGTTAA  2152

Query  605   CTTCAACGACTACTCTCATCGTAACAGTGGAGTATCTAAAGATCAGCAGCAAAGAGCCAA  664
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  2153  CTTCAACGACTACTCTCATCGTAACAGTGGAGTATCTAAAGATCAGCAGCAAAGAGCTAA  2212

Query  665   GAAGAGCGGATTCGCAAGCATTGTGAAGAAAAGCTTCAAGGATCTGACAAAATCTATTCA  724
             ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  2213  GAAGAGCGGATTCGCGAGCATTGTGAAGAAAAGCTTCAAAGATCTGACAAAATCTATTCA  2272

Query  725   GAATGATGAAGGGAACAAAAGCAAGGTTTCGATAAATGGACATCCTTTAACAGAACGTCT  784
             |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  2273  GAATGATGAAGGGAACAAAAGCAATGTTTCGATAAATGGACATCCTTTAACCGAACGTCT  2332

Query  785   GCTGAGAAAAGCAGAGAAGCAAGCCGGAGTCATTCAGCCAGGAAACTACTGGTATGATTA  844
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2333  GCTGAGAAAAGCAGAGAAGCAAGCCGGAGTCATTCAGCCAGGAAACTACTGGTATGATTA  2392

Query  845   CAGAGCTGGATTCTGGGGAGTAATGGGAGGTCCAGGTCTTGGAATATTACCG  896
             ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2393  CAGAGCTGGATTCTGGGGAGTAATGGGAGGTCCAGGTCTTGGAATATTACCG  2444


> AT5G06580.1 | Symbols:  | FAD-linked oxidases family protein 
| chr5:2011288-2016539 REVERSE LENGTH=1968
Length=1968

 Score =  261 bits (141),  Expect = 9e-69
 Identities = 159/168 (95%), Gaps = 0/168 (0%)
 Strand=Plus/Plus

Query  77    CCTCGAGGTGGTTCTTCCTAATGCAGATGTTGTGAAGACAGCTTCACGTGCCAGAAAGAG  136
             |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  873   CCTCAAGGTGGTTCTTCCTAATGGAGATGTTGTGAAGACAGCTTCACGTGCCAGAAAGAG  932

Query  137   TGCTGCAGGATACGATTTGACTCGCTTGATGATTGGGAGTGAGGGGACTTTAGGAGTCAT  196
             |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  933   TGCTGCTGGATACGATTTGACTCGCTTGATAATTGGGAGTGAGGGTACTTTAGGAGTCAT  992

Query  197   AACTGAGATTACTCTCCGGCTTCAGAAAATCGCACAGCATTCCGTGGT  244
              ||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct  993   TACTGAGATTACTCTCCGACTTCAGAAAATCCCACAGCATTCAGTGGT  1040



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45562371329


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5