BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939238

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   346    6e-95


> AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr2:15405068-15406573 REVERSE LENGTH=1506
Length=1506

 Score =  346 bits (187),  Expect = 6e-95
 Identities = 237/260 (91%), Gaps = 7/260 (3%)
 Strand=Plus/Plus

Query  1    CTCCTTCTACTTGGAATTAATATGCTCAGTAGAGGCTATTCTTCGAGTGATACTCCAGTA  60
            ||||||||||||||    |||||||||||||||||||||||||| |||||| |||| || 
Sbjct  230  CTCCTTCTACTTGG----AATATGCTCAGTAGAGGCTATTCTTCAAGTGATTCTCCTGTG  285

Query  61   GAATCGATTTGGTTTTATTCTGAGATGGAGAGACGAGGAATCAAACCTAATAAGCTTACT  120
            |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct  286  GAATCGATTTGGGTTTACTCTGAGATGAAGAGACGAGGAATCAAACCTAATAAGCTCACT  345

Query  121  TTTCCTTTTCTTCTCAAGGCTTGTGCTTCGTTTTTAGGTCTCACTGC-GAGTAGACAGAT  179
            ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct  346  TTTCCTTTTCTTCTCAAGGCTTGTGCTTCGTTTTTAGGTCTCACTGCTGGG-AGACAGAT  404

Query  180  TCAAGTTGAGGTTTTGAAA-ATGGGTTTGATTCTGATGTGTATGTTGGGAATTATTTGAT  238
            ||||||||||||||||||| |||||||||||| |||||| |||||||||||  |||||||
Sbjct  405  TCAAGTTGAGGTTTTGAAACATGGGTTTGATTTTGATGTATATGTTGGGAACAATTTGAT  464

Query  239  TCATCTATATGGTTCTTGTA  258
             ||||| |||||| ||||||
Sbjct  465  CCATCTTTATGGTACTTGTA  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5