BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939243

Length=1777
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62030.2 | Symbols: ROC4 | rotamase CYP 4 | chr3:22973004-22...   606    2e-172


> AT3G62030.2 | Symbols: ROC4 | rotamase CYP 4 | chr3:22973004-22975378 
FORWARD LENGTH=1181
Length=1181

 Score =  606 bits (328),  Expect = 2e-172
 Identities = 444/497 (89%), Gaps = 19/497 (4%)
 Strand=Plus/Plus

Query  1226  CTTGTGTTAAATCAATGG-TGGCGGAGGAAGAAGAAATACTAGAGCCTCAAGCTAAAGTG  1284
             ||||||||||||| |||| | || |||||||||||| || | || |||||||||||||||
Sbjct  380   CTTGTGTTAAATCCATGGCT-GCTGAGGAAGAAGAAGTAATCGAACCTCAAGCTAAAGTG  438

Query  1285  ACAAGCAAGGTTTACTTTGATGTGGAAATTGGAGGTGAAGTTGCTGGAAGAATTGTGATG  1344
             |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  439   ACAAACAAGGTTTACTTTGATGTGGAAATTGGAGGTGAAGTTGCTGGCAGAATTGTGATG  498

Query  1345  GGTCTCTTTGGAGAAGTTGTGCCTAAAACCGTTGAAAAATTTCGTGTCTTGTGTACTGGT  1404
             |||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||
Sbjct  499   GGTCTCTTTGGAGAAGTTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGT  558

Query  1405  GAGAA-AAATTATGGGTACAAGGGTTCTTCCTTCCACCGTATCATCAA-G-------G--  1453
             ||||| ||| || |||||||||||||| || ||||| ||||| || || |       |  
Sbjct  559   GAGAAGAAA-TACGGGTACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGAT  617

Query  1454  --AAGGAGGTGATTTCACCGAGGGAAATGGCACTGGAGGTATAAGTGTCTACGGTGCCAA  1511
               |||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||
Sbjct  618   CCAAGGAGGTGATTTCACCGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAA  677

Query  1512  CTTTGAAGTTGAAAACTTCACCCTGAAGCATACTGGAGCTGGAATCTTGAGCATGGCAAA  1571
              || |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  678   GTTCGAAGATGAAAACTTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAA  737

Query  1572  CGCTGGTCCTAATACTAATAATGGAAGCCAGATTTTCATTTGCACCGTCAAGACTCCATG  1631
             |||||||||||||||||||   ||||||||| |||||||||| |||||||||||| ||||
Sbjct  738   CGCTGGTCCTAATACTAAT---GGAAGCCAGTTTTTCATTTGTACCGTCAAGACTTCATG  794

Query  1632  GTTAGATAACAAGCATGTTGTGTTTGGACAAGTCATTGAAGGTATGAAGCTTGTGAGGAC  1691
             |||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct  795   GTTAGATAACAAGCATGTCGTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGAC  854

Query  1692  ACTTGAATCTCAGGAGA  1708
              ||||| ||||| ||||
Sbjct  855   TCTTGAGTCTCAAGAGA  871



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 87901154295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5