BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939245
Length=3050
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61740.1 | Symbols: SDG14, ATX3 | SET domain protein 14 | ch... 3969 0.0
AT3G62500.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 405 1e-111
AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 388 1e-106
AT3G61723.1 | Symbols: | PHD finger protein | chr3:22846405-22... 180 8e-44
AT5G28320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 176 1e-42
AT5G28400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 171 5e-41
AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 159 1e-37
> AT3G61740.1 | Symbols: SDG14, ATX3 | SET domain protein 14 |
chr3:22850837-22856972 REVERSE LENGTH=3777
Length=3777
Score = 3969 bits (2149), Expect = 0.0
Identities = 2423/2551 (95%), Gaps = 36/2551 (1%)
Strand=Plus/Plus
Query 1 CGACGATTGCTGAGTTAGGACATGATTTTGAAACGTACCTT---GACATTCGAGAATCAG 57
||| ||||||| || ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 404 CGAGGATTGCTTAGGTAGGATATGATTTTGAAACGGACCTTGACGACATTCGAGAATCAG 463
Query 58 AATCTGAAGCGGTGCAAAATTGATTCAGAAATTGAGTATGGGAGCAAAAAGGGTGAGATT 117
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 464 AATCTGAAGCGGTGCAAAATTGATTCAGAAATTGAGTATGGGAGGAAAAAGGGTGAGATT 523
Query 118 ATGGTGTATAAGAAGAGACAAAGAGCAACCGTGGATCAACCATGTAGTAGAGAACCCGAA 177
|| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 524 ATAGTGTATAAGAAGAGACAAAGAGCAACCGTGGATCAACCATGTAGCAAAGAACCAGAA 583
Query 178 CTTCTTACAAGTAGCTCAAGCTCCTTGACCAGC--A-AAGAATCTCAAC-CG--TGCTCC 231
|||||||| |||||||||||||||||||| ||| | |||||||||||| | |||||
Sbjct 584 CTTCTTACTAGTAGCTCAAGCTCCTTGACAAGCAAAGAAGAATCTCAACAAGTTTGCTCT 643
Query 232 GACCAGTCCAAGTCTTCGCGTGGCAGAGTTCGAGCGGTTCCTTCAAGGTTCAAGGACTCC 291
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 644 GACCAGTCCAAGTCTTCGCGTGGCAGAGTTCGAGCGGTTCCTTCTAGGTTCAAGGACTCC 703
Query 292 ATTGTTGGTTCATGGAAATCTGGCCGTCGCAAGGAAGAGTCGACGGAGTCTAGTCATGAT 351
||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 704 ATTGTTGGTACATGGAAATCTAGCCGTCGCAAGGGAGAGTCGACGGAGTCTAGTCATGAT 763
Query 352 ---GACGACGTATCTCTGGGGAAGAAGGTCAAAGGTTTCAGTGGAAGCTCGAAATTGAAT 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 764 GACGACGACGTATCTCTGGGGAAGAAGGTCAAAGGTTTCAGTGGAAGCTCGAAATTGCAT 823
Query 409 CGCAGCAAAGACTCGAAGCTGTTTCCACGTAAGGATAACGGAGACAGCAGCGAAGTAGAT 468
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 824 CGCAGCAAAGACTCGAAGGTGTTTCCACGTAAGGATAACGGAGACAGCAGTGAAGTAGAT 883
Query 469 TGCGATTACTGGGATGTTAAAATTTCCATTTTGTCTTCCTCCGACGATGCTAACTTTGGT 528
|||||||||||||||||| || | | ||||| |||||||||||||||||||
Sbjct 884 TGCGATTACTGGGATGTT-CAA-----A-----T-TTCCTACGACGATGCTAACTTTGGT 931
Query 529 ATACCGAAAAAGCCCGACGCCACGCGTAAGGGCGTGTATAAACCAGAGGAATTTACAGTC 588
|| ||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 932 ATGCCGAAAAAGTCCGACGCCTCGCGTAAGGGCGTGTACAAACCAGAGGAATTTACGGTT 991
Query 589 GGCGATCTTGTCTGGGCCAAGTGTGGGAAAAGATTCCCAGCATGGCCGGCTGTGGTGATC 648
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GGCGATCTTGTGTGGGCCAAGTGTGGGAAAAGATTCCCAGCATGGCCGGCTGTGGTGATC 1051
Query 649 GATCCGATATCGCAAGCGCCTGATGGGGTCTTGAAACATTGCGTCCCAGGCGCAATATGT 708
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1052 GATCCGATATCACAAGCGCCTGATGGGGTCTTGAAACATTGCGTCCCTGGCGCAATTTGT 1111
Query 709 GTCATGTTTTTTGGGTACTCCAAGGATGGAACTCAGAGGGACTATGCATGGGTCAGACAA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1112 GTCATGTTTTTTGGGTACTCCAAGGATGGAACTCAGAGGGACTATGCATGGGTAAGACAA 1171
Query 769 GGAATGATGTATCCATTTACGGAATTTATGGATAAATTTCAGGATCAGACAAACTTGTAC 828
|| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1172 GGGATGGTGTATCCATTTACGGAATTTATGGACAAATTTCAGGATCAGACAAACTTGTTC 1231
Query 829 AATTACAAGCCAATTGAATTTAAGAAGGCACTAGAGGAAGCAGTTTTAGCAGAAAATGGG 888
||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1232 AATTACAAGGCAAGTGAATTTAACAAGGCACTAGAGGAAGCAGTTTTAGCAGAAAAT--G 1289
Query 889 GTCGAGGGTGATTTTGGAGATGTTGAAATTAGCTGCCCAGATTCCTCTGCGACGGAATCC 948
|| | |||||||||||| |||||| | || |||||||||||||||||||||||||
Sbjct 1290 GT--A-----ATTTTGGAGATGCTGAAATCATCTCCCCAGATTCCTCTGCGACGGAATCC 1342
Query 949 GACCAGGAGTATGGACCTGCTTCTAGAATTCAGGGTTTATGTCATGAGGACGTAAGGACC 1008
|||||||| |||||||||||||||||| ||||||||| || |||||||||| |||||||
Sbjct 1343 GACCAGGACTATGGACCTGCTTCTAGATTTCAGGGTTCATATCATGAGGACATAAGGACA 1402
Query 1009 TGCGACGGTTGTGGCTCAGTAATGCCATTAAAATCTCTAAAAAGGACTAAAGGCTCACAA 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1403 TGCGACGGTTGTGGCTCAGTAATGCCATTAAAATCTCTAAAAAGGACTAAAGACTCACAA 1462
Query 1069 CCGGAAGAGCTTTTATGCAAACACTGTTCAAAGTTGCGGAAATCCAATCAGTATTGTGGC 1128
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1463 CCGGAAGAGCTTTTATGCAAACACTGCTCAAAGTTGCGGAAATCCAATCAGTATTGTGGC 1522
Query 1129 ATCTGCAAGAGAATATGGCACCCTTCAGATGATGGAGATTGGGTATGTTGTGATGGGTGT 1188
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1523 ATCTGCAAGAGAATATGGCACCCTTCAGATGATGGAGATTGGGTTTGTTGTGATGGGTGT 1582
Query 1189 AACGTATGGGTACATGCTGGATGCGACAACATTACGAATGAGCGCTTTAAGGAACTGGAG 1248
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1583 GACGTATGGGTACATGCTGAATGCGACAACATTACGAATGAACGCTTTAAGGAACTGGAG 1642
Query 1249 CACAACAATTACTATTGCCCTGATTGTAAAGTCCAACATGAGCTTTCACCAACAATATTA 1308
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 1643 CACAACAATTACTATTGCCCTGATTGTAAAGTCCAACACGAGCTTACGCCAACAATATTA 1702
Query 1309 GAAGAACAGAACTCAGTGTTCAAGTCTACAGAAAAGACGACAGAGACTGAGCTGCCTGAT 1368
|||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 1703 GAAGAACAGAACTCAGTGTTTAAGTCTACAGAAAAGACAACAGAGACTGGGCTGCCTGAT 1762
Query 1369 GCGGTTACTGTAGTCTGTAATGGCATGGAAGGGACATATATCAGAAAATTTCATGCAATT 1428
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 GCGATTACTGTAGTCTGTAATGGCATGGAAGGGACATATATCAGAAAATTTCATGCAATT 1822
Query 1429 GAGTGCAAGTGTGGTTCATGTGGGTCAAGGAAGCAGTCACCAAGTGAATGGGAACGGCAT 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 GAGTGCAAGTGTGGTTCATGTGGGTCAAGGAAGCAGTCACCAAGTGAATGGGAACGGCAT 1882
Query 1489 ACAGGCTGCAGAGCCAAAAAGTGGAAGTATAGTGTAAGAGTGAAAGACACAATGCTACCT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 ACAGGCTGCAGAGCCAAAAAGTGGAAGTATAGTGTAAGAGTGAAAGACACAATGCTACCT 1942
Query 1549 CTAGAAAAATGGATTGCAGAATTTAGTACCTACACTATAGAAACCCAGATGTTGGATAAG 1608
||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 1943 CTAGAAAAATGGATTGCAGAATTCAGTACCTATACTCTAGAAACCCAGATGTTGGATAAG 2002
Query 1609 CAAAAGATGCTCTCTTTGCTGGAAGAAAAGTATGAGCCAGTCAGGGCTAAGTGGACGACT 1668
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2003 CAAAAGATGCTCTCTTTGCTAGAAGAAAAGTATGAGCCAGTCAGGGCTAAGTGGACGACT 2062
Query 1669 GAAAGGTGTGCTGTATGCAGATGGGTAGAAGACTGGGAAGAAAATAAAATGATCATCTGT 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 GAAAGGTGTGCTGTATGCAGATGGGTAGAAGACTGGGAAGAAAATAAAATGATCATCTGT 2122
Query 1729 AACAGATGTCAAGTGGCTGTGCACCAAGAATGCTATGGGGTAAGCAAATCTCAGGACCTC 1788
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2123 AACAGGTGTCAAGTGGCTGTGCACCAAGAATGTTATGGGGTAAGCAAATCTCAGGACCTC 2182
Query 1789 ACTTCCTGGGTGTGCAGAGCATGTGAAACACCAGACATTGAAAGAGAGTGTTGTCTTTGT 1848
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2183 ACTTCCTGGGTATGCAGAGCATGTGAAACACCAGACATTGAGAGAGATTGTTGTCTTTGT 2242
Query 1849 CCTGTAAAAGGCGGTGCTTTAAAACCAAGCGACGTCGAGGGTTTGTGGGTTCATGTAACA 1908
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2243 CCTGTAAAAGGTGGTGCTTTAAAACCAAGCGACGTTGAGGGTTTGTGGGTTCATGTAACA 2302
Query 1909 TGTGCTTGGTTCAGACCGGAAGTTGGGTTTTTGAATCATGAAAATATGGAGCCTGCTGTT 1968
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2303 TGTGCTTGGTTCCGACCGGAAGTTGGGTTTTTGAATCATGAAAATATGGAGCCTGCTGTT 2362
Query 1969 GGACTTTTCAAAATTCCAGCAAATTCATTTCTTAAGGTTTGCACAATTTGTAAGCAGACA 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2363 GGACTTTTCAAAATTCCAGCAAATTCATTTCTTAAGGTTTGCACAATTTGTAAGCAGACA 2422
Query 2029 CATGGTTCCTGCGTGCATTGCTGCAAGTGTGCCACTCACTTCCACGCAATGTGTGCGTCA 2088
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2423 CATGGTTCCTGCGTTCATTGCTGCAAGTGTGCAACTCACTTCCACGCAATGTGTGCATCA 2482
Query 2089 CGGGCAGGTTACAACATGGAGTTGCACTGCCTGGAGAAAAATGGTGTGCAGAGAACCAGG 2148
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2483 CGGGCAGGTTACAACATGGAGTTGCACTGCCTGGAAAAAAATGGTGTGCAGAGAACCAGG 2542
Query 2149 AAGTCAGTTTACTGTTCATTTCACAGGAAGCCAGATCCAGATAGTGTTGTAGTTGTGCAC 2208
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2543 AAGTCAGTTTACTGTTCATTTCACAGAAAGCCAGATCCAGATAGTGTTGTAGTTGTGCAC 2602
Query 2209 ACACCCTCAGGCGTATTTGGCTCTAGAAATTTGCTTCAGAATCAAAATCGGCGCACCAAA 2268
||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 2603 ACACCCTCAGGAGTATTTGGCTCTAGAAATTTGCTTCAGAATCAATATGGGCGCGCCAAA 2662
Query 2269 GGTTCAAGACTCGTTTTGACCAAGAAGATGAAGCTTCCAGGTTTCGAAACCCAAACCCAA 2328
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2663 GGTTCAAGACTCGTTTTGACCAAGAAGATGAAGCTTCCAGGTTTCCAAACCCAAACCCAA 2722
Query 2329 GCCGAACAGAGTCGTGTATTTGATTCTCTTTCTGCAGCAAGATGCCGTATCTATAGTAGA 2388
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2723 GCTGAACAGAGTCGTGTATTTGATTCTCTTTCTGCAGCAAGATGCCGTATCTATAGTAGA 2782
Query 2389 TCAAACACAAAGAAGATTGATCTGGAGGCTATATCCCACAGGCTTAAGGGACCAAGCCAT 2448
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2783 TCAAACACAAAGA---TTGATCTGGAGGCTATATCCCACAGGCTTAAGGGACCAAGCCAT 2839
Query 2449 CATTCTTTGGGTGAAATCGAGAATCGAAACTCTTTTAAGGCAAGTTTCTCATTCAGAGCT 2508
||||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2840 CATTCTTTGAGTGCAATCGAGAATCTAAACTCTTTTAAGGCAAGTTTCTCATTCCGAGCT 2899
Query 2509 CCATTCATGTCAATGTTTTGCTTTCTTGGGG 2539
|||||||||||| ||||||||||||||||||
Sbjct 2900 CCATTCATGTCAGTGTTTTGCTTTCTTGGGG 2930
Score = 881 bits (477), Expect = 0.0
Identities = 501/513 (98%), Gaps = 0/513 (0%)
Strand=Plus/Plus
Query 2538 GGAAGCAGATTTTACCTCATTCAGAGAACGGCTAAAACATTTGCAGAGGACGGAAAATTT 2597
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2989 GGAAGCAGATTTTACATCATTCAGAGAACGGCTAAAACATTTGCAGAGGACAGAAAATTT 3048
Query 2598 TCGAGTCTGCTTTGGTAAATCTGGCATACATGGTTGGGGTTTGTTTGCAAGGAATAGTAT 2657
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 3049 TCGAGTCTGCTTTGGTAAATCTGGCATACATGGATGGGGTTTGTTTGCAAGGAAAAGTAT 3108
Query 2658 TCAAGAAGGAGAAATGATCATCGAGTATCGTGGGGTGAAAGTTAGGAGAAGTGTTGCAGA 2717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 TCAAGAAGGAGAAATGATCATCGAGTATCGTGGGGTGAAAGTTAGGAGAAGTGTTGCAGA 3168
Query 2718 TCTTAGAGAGGCAAACTATCGTTCTCAAGGCAAAGATTGTTACCTATTCAAGATAAGCGA 2777
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 3169 TCTGAGAGAGGCAAACTATCGTTCGCAGGGCAAAGATTGTTACCTATTCAAGATAAGCGA 3228
Query 2778 AGAGATAGTAATTGATGCCACAGACTCTGGAAACATAGCACGATTGATCAATCATTCATG 2837
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 3229 AGAGATAGTAATTGATGCCACAGACTCTGGGAACATCGCACGATTGATCAATCATTCATG 3288
Query 2838 TATGCCCAATTGCTATGCTCGTATAGTGAGTATGGGTGATGGAGAAGACAACAGAATCGT 2897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3289 TATGCCCAATTGCTATGCTCGTATAGTGAGTATGGGTGATGGAGAAGACAACAGAATCGT 3348
Query 2898 CCTCATTGCAAAAACCAATGTCTCAGCTGGGGAAGAGCTTACGTATGATTATCTCTTTGA 2957
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3349 CCTCATTGCAAAAACCAATGTCGCAGCTGGGGAAGAGCTTACGTATGATTATCTCTTTGA 3408
Query 2958 GGTTGATGAATCTGAAGAAATCAAAGTGCCCTGCCTTTGTAAAGCTCCAAACTGCCGCAA 3017
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3409 GGTTGATGAATCTGAAGAGATCAAAGTGCCCTGCCTTTGTAAAGCTCCAAACTGCCGCAA 3468
Query 3018 ATTCATGAACTAGAGCTCTCTCAAGTCTAAACC 3050
||||||||||||||||||||| |||||||||||
Sbjct 3469 ATTCATGAACTAGAGCTCTCTTAAGTCTAAACC 3501
> AT3G62500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SET domain protein 14 (TAIR:AT3G61740.1); Has 66 Blast
hits to 66 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:23120423-23122222
FORWARD LENGTH=1125
Length=1125
Score = 405 bits (219), Expect = 1e-111
Identities = 295/330 (89%), Gaps = 12/330 (4%)
Strand=Plus/Plus
Query 22 ATGATTTTGAAACGTACCTT---GACATTCGAGAATCAGAATCTGAAGCGGTGCAAAATT 78
|||||||||||||| | || ||||||||| |||| ||||||||||||||||||||||
Sbjct 1 ATGATTTTGAAACGGATTTTGACGACATTCGATAATCTGAATCTGAAGCGGTGCAAAATT 60
Query 79 GATTCAGAAATTGAGTATGGGAGCAAAAAGGGTGAGATTATGGTGTATAAGAAGAGACAA 138
|||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GATTTAGAAATTGAGTATGGTAGCCAAAAGGGTGAGATTATGGTGTATAAGAAGAGACAA 120
Query 139 AGAGCAACCGTGGATCAACCATGTAGTAGAGAACCCGAACTTCTTACAAGTAGCTCAAGC 198
|||||| ||| |||||||||||||| |||||||||| | |||| |||||||||||||||
Sbjct 121 CGAGCAAGCGTTGATCAACCATGTAGCAGAGAACCCGGAGTTCTAACAAGTAGCTCAAGC 180
Query 199 TCCTTGACCAG--CA-AAGAATCTCAAC---CGTGCTCCGACCAGTCCAAGTCTTCGCGT 252
||||||||||| | |||||||||||| |||||| |||||||||||||||||||||
Sbjct 181 TCCTTGACCAGTAGAGAAGAATCTCAACAAGTGTGCTCTGACCAGTCCAAGTCTTCGCGT 240
Query 253 GGCAGAGTTCGAGCGGTTCCTTCAAGGTTCAAGGACTCCATTGTTGGTTCATGGAAATC- 311
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 241 GGCAGAGTTCGAGCGGTTCCTTCAAGGTTCAGGGACTCCATTGTTGGTACATGGAAATCC 300
Query 312 TGGCCG--TCGCAAGGAAGAGTCGACGGAG 339
| | | ||||||||||||||||||||||
Sbjct 301 TTGAAGAGTCGCAAGGAAGAGTCGACGGAG 330
Score = 154 bits (83), Expect = 5e-36
Identities = 93/98 (95%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 391 GGAAGCTCGAAATTGAATCGCAGCAAAGACTCGAAGCTGTTTCCACGTAAGGATAACGGA 450
||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct 343 GGAAGCTCGAAATTGCATCGAAGCAAAGACCCGAAGCTGTTTCCACGTAAGGATAACGAA 402
Query 451 GACAGCAGCGAAGTAGATTGCGATTACTGGGATGTTAA 488
|||||||||||||||||||||||||||||||||| |||
Sbjct 403 GACAGCAGCGAAGTAGATTGCGATTACTGGGATGCTAA 440
Score = 150 bits (81), Expect = 7e-35
Identities = 89/93 (96%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 514 GATGCTAACTTTGGTATACCGAAAAAGCCCGACGCCACGCGTAAGGGCGTGTATAAACCA 573
||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 433 GATGCTAACTTTGGTATGCCGAAAAAGTCCGACGCCTCGCGTAAGGGCGTGTACAAACCA 492
Query 574 GAGGAATTTACAGTCGGCGATCTTGTCTGGGCC 606
|||||||||||||||||||||||||||||||||
Sbjct 493 GAGGAATTTACAGTCGGCGATCTTGTCTGGGCC 525
Score = 134 bits (72), Expect = 7e-30
Identities = 91/100 (91%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 1099 AAGTTGCGGAAATCCAATCAGTATTGTGGCATCTGCAAGAGAATATGGCA-CCCTTCAGA 1157
|||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |
Sbjct 959 AAGTTGCGGAAATCCAATCAGTATTGTGGCATTTGCAAGAGAGTATGGCAGCCCTTCAAA 1018
Query 1158 TGATGGAGATTGGGTATGTTGTGATGGGTGTAACGTATGG 1197
||||||||||||||| | |||||||| |||| | ||||||
Sbjct 1019 TGATGGAGATTGGGTTTATTGTGATGAGTGTGATGTATGG 1058
> AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10314118-10317160 FORWARD LENGTH=1308
Length=1308
Score = 388 bits (210), Expect = 1e-106
Identities = 248/265 (94%), Gaps = 7/265 (3%)
Strand=Plus/Plus
Query 981 GGGTTTATGTCATGAGGACGTAAGGAC-CTGCGACGGTTGTGGCTCAGTAATGCCATTAA 1039
||||| ||||||||||||| ||||||| | |||||| |||||||||||||||||||||||
Sbjct 12 GGGTTCATGTCATGAGGACATAAGGACAC-GCGACGCTTGTGGCTCAGTAATGCCATTAA 70
Query 1040 AATCTCTAAAAAGGACTAAAGGCTCACAACCGGAAGAGCTTTTATGCAAACACTGTTCAA 1099
||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 71 AATCTCTAAAAAGGACTAAAGACTCACAGCCGGAAGAGCTTTTATGCAAATACTGTTCAA 130
Query 1100 AGTTGCGGAAATCCAATCAGTATTGTGGCATCTGCAAGAGAATATGGCACCCTTCAGATG 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 131 AGTTGCGGAAATCCAATCAGTATTGTGGCATCTGCAAGAGAATATGGCACCCTCCAGATG 190
Query 1160 ATGGAGATTGGGTATGTTGTGATGGGTGTAACGTATGGG-----TACATGCTGGATGCGA 1214
|| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 191 ATAGAGATTGGGTATGTTGTGATGGGTGTAACGTATGGGACGGGTTCATGCTGAATGCGA 250
Query 1215 CAACATTACGAATGAGCGCTTTAAG 1239
|||||||||||||||||||||||||
Sbjct 251 CAACATTACGAATGAGCGCTTTAAG 275
Score = 150 bits (81), Expect = 7e-35
Identities = 85/87 (98%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1435 AAGTGTGGTTCATGTGGGTCAAGGAAGCAGTCACCAAGTGAATGGGAACGGCATACAGGC 1494
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 273 AAGTGTGGTTCATGTGGGTCAAGGAAGCAGTCACCAAGTGAATGGGAAAGGCATACAGGC 332
Query 1495 TGCAGAGCCAAAAAGTGGAAGTATAGT 1521
|||||||||||||||||||||| ||||
Sbjct 333 TGCAGAGCCAAAAAGTGGAAGTTTAGT 359
> AT3G61723.1 | Symbols: | PHD finger protein | chr3:22846405-22846925
REVERSE LENGTH=424
Length=424
Score = 180 bits (97), Expect = 8e-44
Identities = 105/109 (96%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1174 TGTTGTGATGGGTGTAACGTATGGGTACATGCTGGATGCGACAACATTACGAATGAGCGC 1233
|||||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 152 TGTTGTGATGGGCGTAACGTATGGGTTCATGCTGGGTGCGACATCATTACGAATGAGCGC 211
Query 1234 TTTAAGGAACTGGAGCACAACAATTACTATTGCCCTGATTGTAAAGTCC 1282
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TTTAAGGAACTGGAGCACAACAATTACTATTGCCCTGATTGTAAAGTCC 260
Score = 69.4 bits (37), Expect = 2e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1100 AGTTGCGGAAATCCAATCAGTATTGTGGCATCTGCAAGAG 1139
||||| ||||||||||||||||||||||||||||||||||
Sbjct 22 AGTTGTGGAAATCCAATCAGTATTGTGGCATCTGCAAGAG 61
> AT5G28320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G28400.1);
Has 1861 Blast hits to 1522 proteins in 246 species: Archae
- 19; Bacteria - 134; Metazoa - 673; Fungi - 145; Plants -
123; Viruses - 8; Other Eukaryotes - 759 (source: NCBI BLink).
| chr5:10301936-10306142 FORWARD LENGTH=2784
Length=2784
Score = 176 bits (95), Expect = 1e-42
Identities = 123/136 (90%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 804 ATTTCAGGATCAGACAAACTTGTACAATTACAAGCCAATTGAATTTAAGAAGGCACTAGA 863
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||
Sbjct 2647 ATTTCAGGATCAGACAAACTTGTACAATTACAAGCCAA---A-TTTAAGAATGCACTTGA 2702
Query 864 GGAAGCAGTTTTAGCAGAAAATGGGGTCGAGGGTGATTTTGGAGATGTTGAAATTAGCTG 923
||||||||||||||||||||||||||||||| | ||| | |||||| |||||| |||||
Sbjct 2703 GGAAGCAGTTTTAGCAGAAAATGGGGTCGAGAATAATTGTAGAGATGCTGAAATCAGCTG 2762
Query 924 CCCAGATTCCTCTGCG 939
||||||||||||||||
Sbjct 2763 CCCAGATTCCTCTGCG 2778
> AT5G28400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G28320.1);
Has 2580 Blast hits to 2028 proteins in 270 species: Archae
- 20; Bacteria - 158; Metazoa - 939; Fungi - 198; Plants -
144; Viruses - 14; Other Eukaryotes - 1107 (source: NCBI BLink).
| chr5:10344024-10348234 REVERSE LENGTH=2922
Length=2922
Score = 171 bits (92), Expect = 5e-41
Identities = 122/136 (90%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 804 ATTTCAGGATCAGACAAACTTGTACAATTACAAGCCAATTGAATTTAAGAAGGCACTAGA 863
|||||||||| ||||||||||||||||||||||||| | |||||||||| ||||| ||
Sbjct 2785 ATTTCAGGATTAGACAAACTTGTACAATTACAAGCC-A---AATTTAAGAATGCACTTGA 2840
Query 864 GGAAGCAGTTTTAGCAGAAAATGGGGTCGAGGGTGATTTTGGAGATGTTGAAATTAGCTG 923
||||||||||||||||||||||||||||||| | ||| | |||||| |||||| |||||
Sbjct 2841 GGAAGCAGTTTTAGCAGAAAATGGGGTCGAGAATAATTGTAGAGATGCTGAAATCAGCTG 2900
Query 924 CCCAGATTCCTCTGCG 939
||||||||||||||||
Sbjct 2901 CCCAGATTCCTCTGCG 2916
> AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10338723-10341007 REVERSE LENGTH=1173
Length=1173
Score = 159 bits (86), Expect = 1e-37
Identities = 121/136 (89%), Gaps = 9/136 (7%)
Strand=Plus/Plus
Query 1196 GGGTACATGCTGGATGCGACAACATTACGAATGAGCGCTTTAAGGAACTGGAGCACAACA 1255
|||| ||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 8 GGGTTCATGCTGAATGCGACAACATTACGAATGAGCGCTTT-----A----AGCACAACA 58
Query 1256 ATTACTATTGCCCTGATTGTAAAGTCCAACATGAGCTTTCACCAACAATATTAGAAGAAC 1315
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 59 ATTACTATTGCCCTGATTGTAAAATCCAACATGAGCTTGCGCCAACAATATTAGAAGAAC 118
Query 1316 AGAACTCAGTGTTCAA 1331
|||| |||||||||||
Sbjct 119 AGAATTCAGTGTTCAA 134
Score = 156 bits (84), Expect = 1e-36
Identities = 88/90 (98%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1432 TGCAAGTGTGGTTCATGTGGGTCAAGGAAGCAGTCACCAAGTGAATGGGAACGGCATACA 1491
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 135 TGCAAGTGTGGTTCATGTGGGTCAAGGAAGCAGTCACCAAGTGAATGGGAAAGGCATACA 194
Query 1492 GGCTGCAGAGCCAAAAAGTGGAAGTATAGT 1521
||||||||||||||||||||||||| ||||
Sbjct 195 GGCTGCAGAGCCAAAAAGTGGAAGTTTAGT 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151654668689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5