BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939254
Length=220
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61827.1 | Symbols: | unknown protein; Has 30201 Blast hits... 246 5e-65
> AT3G61827.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:22886842-22887027
REVERSE LENGTH=186
Length=186
Score = 246 bits (133), Expect = 5e-65
Identities = 168/183 (92%), Gaps = 9/183 (5%)
Strand=Plus/Plus
Query 21 ATGGCTACACCCACACTCGCACAAGGTCACAGCCATGACTCTTTATGGGACGAGCGTCTT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACACCCACACTCGCACAAGGTCACAGCCATGACTCTTTATGGGACGAGCGTCTT 60
Query 81 GGGAAGCGTGTGAGTT--ATGTTAGCACGTGCCGAGTCAGTTCTGAGTCGC-GCGTGTTC 137
|||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||
Sbjct 61 GGGAAGCGTGTGAGTTTTATGTTACCACGTGCCGAGTCAGTTCTGAGTCGCTG-GTGTTC 119
Query 138 ATGTTGTACTCTTTTT---CTT-CACGCGCTTC-AATCTTAGCAAATAAAAAATCGAAAC 192
||| |||| ||||||| ||| ||||||||| ||||||||||||| |||||||||||
Sbjct 120 ATGCTGTATTCTTTTTTTTCTTTCACGCGCTTTTAATCTTAGCAAATCAAAAATCGAAAT 179
Query 193 TAT 195
|||
Sbjct 180 TAT 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9852478804
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5