BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939260
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61880.2 | Symbols: CYP78A9 | cytochrome p450 78a9 | chr3:22... 2556 0.0
> AT3G61880.2 | Symbols: CYP78A9 | cytochrome p450 78a9 | chr3:22905868-22907958
REVERSE LENGTH=1847
Length=1847
Score = 2556 bits (1384), Expect = 0.0
Identities = 1540/1617 (95%), Gaps = 4/1617 (0%)
Strand=Plus/Plus
Query 1 TCTTTTGCTCCTCTGCTTCCATGGCCACCAAGCTCGACACCAGTAGCTTACTTTTGGCCA 60
||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 TCTCTTGTTCCTCTGCATCCATGGCCACCAAGCTCGACACCAGTAGCTTACTTTTGGCCC 108
Query 61 TCTTCTCCAAATGTAGCCTCCTTACTCAAACCAAtcttgctctctctctcctcgtagcct 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 TCTTGTCCAAATGTAGCCTCCTTACTCAAACCAATCTTGCTCTCTCTCTCCTCGTAGCCT 168
Query 121 cccttgcttctctcgctctttctctcttcttctggtctcATCCCGGAGGACCCGCATGGG 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CCCTAGCTTCTCTCGCTCTTTCTCTCTTCTTCTGGTCTCATCCCGGAGGACCCGCATGGG 228
Query 181 GAAAGTACTTCCTCCATCGCCGCCGTCAAACCACCGTAATACCTGGACCAAGAGGCTTAC 240
|||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||
Sbjct 229 GAAAGTACTTCCTCCACCGCCGCCGTCAAACCACCGTGATACCCGGGCCAAGAGGCTTAC 288
Query 241 CTTTTGTCGGAAGCATGTCTCTCATGTCAAGTGCTCTGGCTCACCGTTGCATAGCCGCAA 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 289 CTTTTGTCGGAAGCATGTCTCTCATGTCAAACACTCTGGCTCACCGTTGCATAGCCGCAA 348
Query 301 CCGCAGAAAAATTTGGAGCCAAACGTTTAATGGCGTTTAGCTTAGGAGAAACTCGCGTGA 360
||||||| |||||| ||||| |||| |||||||||||||| || ||||||||||||||||
Sbjct 349 CCGCAGAGAAATTTAGAGCCGAACGGTTAATGGCGTTTAGTTTGGGAGAAACTCGCGTGA 408
Query 361 TCGTCACGTGCAATCCTGATGTAGCTAAAGAGATTCTAAACAGTCCGGTTTTTGCTGACC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 409 TCGTCACGTGCAATCCTGATGTAGCTAAAGAGATTCTAAACAGTCCGGTTTTCGCTGACC 468
Query 421 GACCGGTTAAGGAATCAGCTTATTCTCTTATGTTTAACCGAGCTATCGGTTTCGCACCTT 480
| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||
Sbjct 469 GCCCGGTTAAGGAATCAGCTTATTCCCTCATGTTTAACCGTGCTATCGGTTTCGCTCCTT 528
Query 481 ACGGCGTTTACTGGCGAACCTTGAGAAGAATCGCGTCTAATCATCTTTTTAGTCCGAAAC 540
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 529 ACGGCGTTTACTGGCGAACCTTGAGAAAAATCGCGTCTAATCATCTTTTCAGCCCGAAAC 588
Query 541 AGATTAAACGTTCCGAAACGCAGAGACGTGAGATCGCCAATCAGATCGTCAAGTGTCTTG 600
|||||||||||||||||||||||||| | | |||||| ||||| ||||| ||||||||
Sbjct 589 AGATTAAACGTTCCGAAACGCAGAGAAGCGTGATCGCGAATCAAATCGTGAAGTGTCTCA 648
Query 601 CAAAACAGAGTAACACCAAAGGTCTCTGTTTTGCACGTGACTTGATCAAAACGGCATCGC 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 649 CAAAACAGAGTAACACCAAAGGTCTCTGTTTCGCACGTGACTTGATCAAAACGGCATCGC 708
Query 661 TTAATAACATGATGTGCTCTGTTTTTGGAAAAGAATATGAGCTTGA-GAACGAGCATGAA 719
||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct 709 TTAATAACATGATGTGCTCTGTTTTCGGAAAAGAATACGAGCTTGAGGAA-GAGCATGAA 767
Query 720 GAAGTGAGTGAGCTACGTGGATTGGTGGAAGAAGGTTATGATTTACTCGGTACACTTAAT 779
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 768 GAAGTGAGTGAGCTACGTGAATTGGTGGAAGAAGGTTATGATTTACTCGGTACACTGAAT 827
Query 780 TGGACCGATCATCTCCCATGGCTCTCGGAGTTTGATCCTCAGAGAATCCGGTCTAGATGC 839
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 828 TGGACCGATCATCTCCCATGGCTCTCTGAATTTGATCCTCAAAGAATCCGGTCTAGATGC 887
Query 840 TCCAATCTCGTACCGAAAGTAAACCGGTTTGTGAACCGGATTATCTCTGACCACCGTGAT 899
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCTAATCTCGTCCCAAAAGTAAACCGGTTTGTGAACCGGATTATCTCTGACCACCGTGAA 947
Query 900 CAAACTCGTGACTCACCGAGTGACTTCGTTGACGTATTGCTCTCTCTTGATGGTCCTGAT 959
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 948 CAAACTCGTGACTCACCGAGTGACTTCGTTGACGTATTGCTCTCTCTCGATGGTCCTGAT 1007
Query 960 AAATTATCCGACCCTGATATCGTCGCTGTTCTCTGGGAAATGATATTCAGAGGAACTGAC 1019
||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 1008 AAATTATCCGACCCTGATATCATCGCCGTTCTATGGGAAATGATATTCAGAGGAACTGAC 1067
Query 1020 ACGGTGGCTGTTTTGATCGAGTGGATTCTTGCTAGGATGGTCCTACATCCAGATATTCAA 1079
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1068 ACGGTGGCTGTTTTGATCGAGTGGATTCTTGCTAGGATGGTCCTTCATCCAGATATTCAA 1127
Query 1080 TCGACGGTTCACAATGAGCTTGATCAAATCGTGGGAAGATCAAGAGCCGTCGAAGAGTCT 1139
|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 1128 TCGACGGTTCACAATGAGCTTGATCAAATCGTGGGACGATCAAGGGCTGTCGAAGAGTCT 1187
Query 1140 GACGTGGCATCTTTAG-AGTATCTAACGGCTGTTGTGAAAGAAGTCTTGAGGCTTCACCC 1198
||||||| ||| ||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1188 GACGTGGTGTCTCTAGTA-TATCTAACGGCTGTGGTGAAAGAAGTCTTGAGGCTTCACCC 1246
Query 1199 GCCAGGCCCACTACTCTCTTGGGCCCGTTTAGCAATCACAGATACGATCATCGACGGTTG 1258
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1247 GCCAGGCCCACTACTCTCATGGGCCCGTTTAGCAATCACAGACACGATCATCGACGGTCG 1306
Query 1259 TCGTGTTCCGGCTGGGACCACCGCAATGGTGAACATGTGGGCTATAGCACACGATCCACA 1318
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1307 TCGTGTTCCGGCGGGGACCACCGCAATGGTGAACATGTGGGCTATTGCACACGATCCACA 1366
Query 1319 CGTGTGGGAGAATCCGTTGGAGTTTAAACCCGAACGTTTTGTAGCCAAGGAAGGTGAGGT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 CGTGTGGGAGAATCCGTTGGAGTTTAAACCCGAACGTTTTGTAGCCAAGGAAGGTGAGGT 1426
Query 1379 TGAGTTCTCGGTTCTTGGGTCGGATTTGAGGCTAGCACCGTTCGGGTCGGGTCGTCGGGT 1438
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1427 TGAGTTCTCGGTTCTTGGGTCTGATTTGAGGCTTGCACCGTTCGGGTCCGGTCGTCGGGT 1486
Query 1439 TTGCCCCGGGAAGAATCTTGGTTTGACCACCGTGACGTTTTGGACTGCGACGCTTTTGCA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 TTGCCCCGGGAAGAATCTTGGTTTGACCACCGTGACGTTTTGGACTGCGACGCTTTTGCA 1546
Query 1499 TGAGTTTGAATGGCTAACATCGTCCGATGAGAAGACCGTTGACTTGTCCGAGAAACTGAG 1558
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 TGAGTTTGAATGGCTGACGCCGTCCGATGAGAAGACCGTTGACTTGTCCGAGAAACTGAG 1606
Query 1559 GCTCTCGTGTGAGATGGCTAATCCTCTTGCTGGTAAATTACGCCCCAGGCGTAGTTT 1615
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1607 GCTCTCGTGTGAGATGGCTAATCCTCTTGCTGCTAAATTACGCCCCAGGCGCAGTTT 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5