BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939264
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61910.1 | Symbols: NST2, ANAC066, NAC066 | NAC domain prote... 1325 0.0
AT2G46770.1 | Symbols: NST1, ANAC043 | NAC (No Apical Meristem)... 425 3e-118
AT1G62700.1 | Symbols: VND5, ANAC026 | Arabidopsis NAC domain c... 189 5e-47
> AT3G61910.1 | Symbols: NST2, ANAC066, NAC066 | NAC domain protein
66 | chr3:22929006-22930442 REVERSE LENGTH=1227
Length=1227
Score = 1325 bits (717), Expect = 0.0
Identities = 918/1009 (91%), Gaps = 37/1009 (4%)
Strand=Plus/Plus
Query 1 TTCTTCTTCTTTTTCTATCTTTAGCAATGAACATATCAGTAAACGGACAGTCACAAGTGC 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 10 TTCTTCTCCTTTTTCTATCTTTAGCAATGAACATATCAGTAAACGGACAGTCACAAGTAC 69
Query 61 CTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGCTCTTGAACTATTACCTTCGCAAGA 120
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 70 CTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGCTCTTGAAGTATTACCTCCGCAAGA 129
Query 121 AAATCTCTAGTATCAAGATCGATCTCGATGTTATTCCTGACGTTGATCTCAACAAGCTCG 180
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 130 AAATCTCTAACATCAAGATCGATCTCGATGTTATTCCTGACATTGATCTCAACAAGCTCG 189
Query 181 AGCCTTGGGATATTCAAGAGATGTGTAAGATTGGAACGACGCCGCAAAACGATTGGTACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AGCCTTGGGATATTCAAGAGATGTGTAAGATTGGAACGACGCCGCAAAACGATTGGTACT 249
Query 241 TCTT-TAGCCATAAGGACAAGAAGTATCCCACGGGGACTAGAACTAACCGAGCCACCACG 299
| || ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 250 T-TTATAGCCATAAGGACAAGAAGTATCCCACCGGGACTAGAACCAACAGAGCCACCACG 308
Query 300 GTGGGATTTTGGAAAGCTACGGGACGTGACAAGATCATATATACCAATGGTGATAGGATC 359
|| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 309 GTCGGATTTTGGAAAGCGACGGGACGTGACAAGACCATATATACCAATGGTGATAGAATC 368
Query 360 GGGATGCGAAAAACGCTAGTCTTCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGAT 419
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GGGATGCGAAAGACGCTTGTCTTCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGAT 428
Query 420 TGGATCATGCACGAATATAGACTCGACGAGAGTGTATTAATCTCCTCGAGTGGCAATGAT 479
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 429 TGGATCATGCACGAATATAGACTCGACGAGAGTGTATTAATCTCCTCGTGTGGCGATCAT 488
Query 480 GGCGTCACCGTAGAAACGTGTGATGTCATAGGAGGTGACGAAGGATGGGTGGTGTGTCGT 539
| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 489 GACGTCAACGTAGAAACGTGTGATGTCATAGGAAGTGACGAAGGATGGGTGGTGTGTCGT 548
Query 540 GTTTTCAAGAAGAAGAGCCTTTGCAAAAACATGATTAGCAG---CCCGG----T--G--- 587
||||||||||| || | ||||||||||||||||||||| || ||||| | |
Sbjct 549 GTTTTCAAGAAAAATAACCTTTGCAAAAACATGATTAGTAGTAGCCCGGCGAGTTCGGTG 608
Query 588 AAAACGTCGTCGTTCAACGTAG-AGACTATCGAGCGAA-TTCTTGAAGATATGGGGCAAT 645
|||||| |||||||||| | || |||||||||||| || |||| |||| |||||||||||
Sbjct 609 AAAACGCCGTCGTTCAATG-AGGAGACTATCGAGC-AACTTCTCGAAGTTATGGGGCAAT 666
Query 646 CTTGTAAAGAAGTGATAATTTCAGACCCTTTCTTAAAACTCCCTAAC----AA--C-A-- 696
||||||||| || |||| ||| ||||||||||||||||||||||||| || | |
Sbjct 667 CTTGTAAAGGAGAGATAGTTTTAGACCCTTTCTTAAAACTCCCTAACCTCGAATGCCATA 726
Query 697 -C--CAC-A--ATCACGAATTATCAGCGGTTAA-CGGACGACCGAGTCAACAACTGCCAC 749
| ||| | ||||||| ||||||| |||||| || |||||| ||||||||||||||||
Sbjct 727 ACAACACCACCATCACGAGTTATCAGTGGTTAATCG-ACGACCAAGTCAACAACTGCCAC 785
Query 750 GTCAGCAAAGTTATGGATCCCAGCTTCGTCACAAGCTGGGCCGCTTTGGATCGGCTCGTT 809
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 786 GTCAGCAAAGTTATGGATCCCAGCTTCATCACTAGCTGGGCCGCTTTGGATCGGCTCGTT 845
Query 810 GCCTCGCAACTAAATGGGCCCAACTCGTATTCAATCCCAGCCGTCAATGAGACCTCACAA 869
||||| || ||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 846 GCCTCACAGTTAAATGGGCCCAACTCGTATTCAATACCAGCCGTTAATGAGACTTCACAA 905
Query 870 TCACCGT-TCCATGGACTAAACCGGTCCGGTTATAATACCGGTTTAACGCCTGATTATTA 928
||||||| || ||||||| ||||||||||||| ||||||||||||||| || ||||| ||
Sbjct 906 TCACCGTATC-ATGGACTGAACCGGTCCGGTTGTAATACCGGTTTAACACCAGATTACTA 964
Query 929 TATACCGGAGATGGATTTATGGAACGATACAGATTTCGGGAGAACGACA 977
|||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 965 TATACCGGAGATTGATTTATGGAACGAGGCAGATTTCGCGAGAACGACA 1013
Score = 63.9 bits (34), Expect = 3e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1010 GAACGGTATTGGATAACGGAAATGGAAGAGAGGAAGT 1046
|||||||| ||||||||||||||||||||||||||||
Sbjct 1025 GAACGGTAGTGGATAACGGAAATGGAAGAGAGGAAGT 1061
> AT2G46770.1 | Symbols: NST1, ANAC043 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr2:19220727-19222916
REVERSE LENGTH=1382
Length=1382
Score = 425 bits (230), Expect = 3e-118
Identities = 360/423 (85%), Gaps = 8/423 (2%)
Strand=Plus/Plus
Query 27 ATGAACATATCAGTAAACGGACAGTCACAAGTGCCTCCTGGCTTTAGGTTTCACCCAACC 86
|||| ||||||||| |||||||| || |||||||||||||| ||||||||||| || |||
Sbjct 110 ATGAGCATATCAGTGAACGGACAATCTCAAGTGCCTCCTGGGTTTAGGTTTCATCCGACC 169
Query 87 GAGGAAGAGCTCTTGAACTATTACCTTCGCAAGAAAATCT-CTAGTATCAAGATCGATCT 145
||||||||||| ||| | ||||| || || |||||| | | ||| ||| ||||||||||
Sbjct 170 GAGGAAGAGCTGTTGCAGTATTATCTCCGGAAGAAAGT-TAATAGCATCGAGATCGATCT 228
Query 146 CGATGTTATTC-CTGACGTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 204
||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 229 TGATGTCATTCGC-GACGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGAGATGT 287
Query 205 GTAAGATTGGAACGACGCCGCAAAACGATTGGTACTTCTTTAGCCATAAGGACAAGAAGT 264
|||| || ||||| ||||| |||||||| ||||| ||||||||||| |||||||| || |
Sbjct 288 GTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAAT 347
Query 265 ATCCCACGGGGACTAGAACTAACCGAGCCACCACGG-TGGGATTTTGGAAAGCTACGGGA 323
|||| ||||| || ||||||||| ||||||| ||| ||| |||||||||||| || ||
Sbjct 348 ATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGCTGG-ATTTTGGAAAGCAACTGGC 406
Query 324 CGTGACAAGATCATATATACCAATGGT-GATAGGATCGGGATGCGAAAAACGCTAGTCTT 382
|| |||||||||||||||| |||||| | ||| || |||||| |||| || || || ||
Sbjct 407 CGCGACAAGATCATATATAGCAATGGCCG-TAGAATTGGGATGAGAAAGACTCTTGTTTT 465
Query 383 CTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGACT 442
||||||||| ||||| ||||| || || ||||| |||||||||||||| |||||||||||
Sbjct 466 CTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGACT 525
Query 443 CGA 445
|||
Sbjct 526 CGA 528
> AT1G62700.1 | Symbols: VND5, ANAC026 | Arabidopsis NAC domain
containing protein 26 | chr1:23216218-23217916 REVERSE LENGTH=1185
Length=1185
Score = 189 bits (102), Expect = 5e-47
Identities = 223/281 (79%), Gaps = 10/281 (4%)
Strand=Plus/Plus
Query 162 GTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGTGTAAGATTGG-AACGAC 220
|||||||| ||||| | ||||| || ||| |||||||| | || ||||| || |||||
Sbjct 124 GTTGATCTTTACAAGATTGAGCCATGTGATCTTCAAGAGTTATGCAAGATAGGAAACGAA 183
Query 221 GCCGCAAAACGATTGGTACTTCTTTAGCCATAAGGACAAGAAGTATCCCACGGGGACTAG 280
| ||| | ||| |||||||||||||| ||||| |||||||||||||||||||| ||| |
Sbjct 184 G-AGCAGAGCGAATGGTACTTCTTTAGTCATAAAGACAAGAAGTATCCCACGGGAACTCG 242
Query 281 AACTAACCGAGCCACCACGGTGGGATTTTGGAAAGCTACGGGACGTGACAA-G--ATCAT 337
||| || ||||||| | | |||||||||||||| || ||| | ||||| | || ||
Sbjct 243 AACCAATAGAGCCACGAAAGCAGGATTTTGGAAAGCCACTGGAAGAGACAAGGCTAT-AT 301
Query 338 ATATACCA-ATGGTGATAGGATCGGGATGCGAAAAACGCTAGTCTTCTACAAAGGTCGAG 396
||||| | || || | ||||| ||| | ||||| || || || |||||||| |||
Sbjct 302 ATATAAGACATAGT-CT--TATCGGTATGAGGAAAACACTTGTGTTTTACAAAGGAAGAG 358
Query 397 CCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATAT 437
|||| |||||||||||||||||||||||||||||||||||
Sbjct 359 CCCCAAATGGTCAGAAATCCGATTGGATCATGCACGAATAT 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5