BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939265
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 854 0.0
> AT3G61920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G64700.1);
Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22932496-22933362
REVERSE LENGTH=867
Length=867
Score = 854 bits (462), Expect = 0.0
Identities = 547/587 (93%), Gaps = 9/587 (2%)
Strand=Plus/Plus
Query 17 aaaaaTGGGTAACTGCGTATTCAAAGGCAATGGTGGTTTAAGTAAATTACACGATAAAGA 76
|||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||
Sbjct 158 AAAAATGGGTAACTGCGTATTCAAAGGCAATGGTGGTTCAAGAAAATTATACGATAAAGA 217
Query 77 TGATTCATTGATAAAAGTTGTGACCCCAAACGGTGGCGTGATGGAGCTTCATCCTCCCAT 136
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 218 TGATTCGTTGATAAAAGTGGTGACTCCAAACGGTGGCGTGATGGAGCTTCATCCTCCCAT 277
Query 137 CTTCGCCGAATTCATCACCAACGAATTTCCCGGCCACGTCATCCACGACTCTTTAAGCCT 196
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 278 CTTCGCCGAATTCATCACCAACGAATTTCCCGGCCATGTCATCCACGACTCTTTAAGCCT 337
Query 197 CCGTCACTCATCTCCACCGCTTCTCCACGGCGAAGAACTCTTTCCTGGTAACATCTACTA 256
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 338 CCGCCACTCATCTCCACCGCTTCTCCACGGCGAAGAACTCTTTCCCGGTAACATCTACTA 397
Query 257 CCTCCTCCCTCTTTCTTG--C-GCCGCCTCAACTGCTCAACAACATTCCTCCGACCAGTT 313
|||||| |||||||||| | || ||| | || ||||||| ||||||||||||| |
Sbjct 398 CCTCCTTCCTCTTTCTTCTTCCGCAGCCGCGACCGCTCAACTGGATTCCTCCGACCAACT 457
Query 314 ATCAACGCCGTACAGAATGTCTTTCGGGAAAACGCCGGTAATGGCGGCTTTGAGTGGTGG 373
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 458 ATCAACGCCGTACAGAATGTCTTTCGGGAAGACGCCGATAATGGCGGCTTTGAGTGG--- 514
Query 374 CGCCGGAGGGGGTGGAGTATGGAAGGTGAGGCTTGTGATAAGTCCGGAGCAGCTGGCGGA 433
|| | || ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 515 CG--GT-GGTTGTGGAGTGTGGAAGGTGAGGCTTGTGATAAGTCCGGAGCAGTTGGCGGA 571
Query 434 AATTCTTGCGGAGGATGTGGAAACGGAAGCGTTGGTGGAAAGTGTGAGGACGGTGGCGAA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AATTCTTGCGGAGGATGTGGAAACGGAAGCGTTGGTGGAAAGTGTGAGGACGGTGGCGAA 631
Query 494 GTGCGGCGGTCACGGCTGCGGCGGAGGAGTTCATTCGAGGGCGAATTCAGACCAGCTAAG 553
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 632 GTGTGGCGGTTACGGCTGCGGCGGAGGAGTTCATTCGAGAGCGAATTCAGACCAGCTAAG 691
Query 554 CGTTACGAGTAGCTTTAAAGGGAAATTGAGGTAAAATTTCGAATTAT 600
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 692 CGTTACGAGTAGCTTTAAAGGGAAATTGTGGTAAAATTTCGAATTAT 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5