BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939269
Length=1922
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61960.1 | Symbols: | Protein kinase superfamily protein | ... 3192 0.0
AT2G37840.1 | Symbols: | Protein kinase superfamily protein | ... 161 2e-38
> AT3G61960.1 | Symbols: | Protein kinase superfamily protein
| chr3:22941773-22945288 REVERSE LENGTH=2366
Length=2366
Score = 3192 bits (1728), Expect = 0.0
Identities = 1860/1924 (97%), Gaps = 8/1924 (0%)
Strand=Plus/Plus
Query 3 AAAACCCAAAAAA-TCTGGATGGAGTCGGCACGACTTGTGGGTGACTACGAACTTGGCCC 61
|||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 275 AAAA-CCAAAAAATTCCGGATGGAGTCGGCACGACTTGTGGGTGACTACGCACTTGGCCC 333
Query 62 GAGGATTGGGTCTGGTTCGTTTGCGGTGGTGTGGTTAGCGAAGCATCGATCGTCTGGTTT 121
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 334 GAGAATTGGGTCTGGTTCGTTTGCGGTGGTGTGGTTAGCGAAGCATCGATCTTCTGGTTT 393
Query 122 AGAAGTCGCCGTCAAAGAGATTGATAAGAAACTTCTTAGCCCTAAAGTCAGAGATAATCT 181
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 394 AGAAGTTGCCGTCAAAGAGATTGATAAGAAACTTCTTAGCCCTAAAGTAAGAGATAATCT 453
Query 182 TCTTAAAGAGATTTCGATCCTTAGCACAATCGATCATCCTAATATCATCCGATTCTACGA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TCTTAAAGAGATTTCGATCCTTAGCACAATCGATCATCCTAATATCATCCGATTCTACGA 513
Query 242 AGCAATCGAGACTGGAGATAGGATATTTCTTGTGTTGGAGTATTGTAGTGGAGGTGATCT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 AGCAATCGAGACTGGAGATAGGATATTTCTTGTGTTGGAGTATTGTAGTGGAGGTGATCT 573
Query 302 TGCTGGGTATATCAATCGCCATGGGAAAGTACCTGAAGCTGTTGCTAAACATTTTATGAG 361
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 574 TGCTGGCTATATCAATCGCCATGGCAAAGTACCTGAAGCTGTTGCTAAACATTTTATGAG 633
Query 362 GCAATTGGCTTTAGGGTTACAAGTACTTCAAGAGAAGCATTTTATTCACCGAGATTTAAA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GCAATTGGCTTTAGGGTTACAAGTACTTCAAGAGAAGCATTTTATTCACCGAGATTTAAA 693
Query 422 GCCTCAGAATTTACTTTTATCGTCCAAGGAAGTTACTCCATTGCTAAAGATAGGGGATTT 481
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 694 GCCTCAGAATTTACTTTTATCTTCCAAGGAAGTAACTCCATTGCTAAAGATAGGAGATTT 753
Query 482 TGGGTTTGCAAGGTCTCTAACACCGGAGAGCATGGCGGAAACATTTTGCGGTTCTCCATT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TGGGTTTGCAAGGTCTCTAACACCGGAGAGCATGGCGGAAACATTTTGCGGTTCTCCATT 813
Query 542 GTATATGGCTCCAGAAATTATCCGGAACCAAAAGTATGATGCTAAGGCTGACTTATGGAG 601
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 814 GTATATGGCTCCAGAAATTATCCGGAATCAAAAGTATGATGCTAAGGCTGACTTATGGAG 873
Query 602 TGCCGGTGCGATTTTGTTTCAACTTGTTACTGGGAAACCACCTTTTGATGGAAATAATCA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TGCCGGTGCGATTTTGTTTCAACTTGTTACTGGGAAACCACCTTTTGATGGAAATAATCA 933
Query 662 CATACAGCTTTTTCATAATATTGTAAGAGACACTGAGCTGAAATTTCCTGAAGATGCTAG 721
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 934 CATACAGCTTTTTCATAATATTGTGAGAGACACTGAGCTGAAATTTCCTGAAGATACTAG 993
Query 722 GAATGAGATTCATCCAGATTGTGTTGATCTATGCAGAAGTCTTCTCCGCCGAAACCCAAT 781
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 994 GAATGAGATTCATCCAGATTGTGTTGATCTGTGCAGAAGTCTTCTCCGCCGAAACCCAAT 1053
Query 782 TGAACGCTTGACATTCCGAGAGTTCTTCAATCACATGTTCCTTCGAGAGCCAAGACAAAT 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TGAACGCTTGACATTCCGAGAGTTCTTCAATCACATGTTCCTTCGAGAGCCAAGACAAAT 1113
Query 842 GCCGGATGTTGTGCATTCTGGTTCTACTACCTCTACGGGGAAATCATC-GTTGCCCTCCG 900
|||||||||| ||||||||||| || ||||| ||||||||||||| | |||||||||||
Sbjct 1114 TCCGGATGTTGAGCATTCTGGTTTTAGTACCTGTACGGGGAAATCA-CTGTTGCCCTCCG 1172
Query 901 CACAACCGAGTACTAGTACAAACCGTTTTAAATCAAGTGCAGAGAATGTTCACAAACATG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CACAACCGAGTACTAGTACAAACCGTTTTAAATCAAGTGCAGAGAATGTTCACAAACATG 1232
Query 961 GGAGTTCCTCTAGTGCCTCAAATTCTCAAATTTCAATGCCACATATCTCTTTTGAGAAGA 1020
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1233 GGAGTTCCTCTAGTGCCTCAAATTCTCAAATTTCAATGCCACATACCTCTTTTGAGAAGA 1292
Query 1021 CTAGAAAAGACACTGAGGGACAATGCTCACCAAATCAATTTGGAGTTGTTGACTCACTTG 1080
|||||||||| |||||||||||||||||| |||| |||| |||||||||||| ||||| |
Sbjct 1293 CTAGAAAAGATACTGAGGGACAATGCTCATCAAACCAATCTGGAGTTGTTGATTCACTCG 1352
Query 1081 AGCTCATAGAGCGAGAGTATGTTCTTGTAAACCGTCCTTCTGCCTCGCTGGAAGGGTCAT 1140
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1353 AGCTCATAGAGAGAGAGTATGTTCTTGTAAACCGTCCTTCTGCCTCGCTGGAAGGTTCAT 1412
Query 1141 CAGATTGTTTCGACACATCATTGCAAGATTCCGGTTTTCCTAATATCTTACCCAGGAATG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1413 CAGATTGTTTCGACACATCATTGCAAGATTCCGGTTTTCCTAATATCTTACCAAGGAATG 1472
Query 1201 AAAAAGTTTCATCAAGTTCACTTGAAGCACAGAGACCATCATCTGATGTGTCAGGTTCAC 1260
||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 1473 AAAAAGTTTCATCGAGTTCACTTGAAGCACAGAAACCATTATCTGATGTGTCAGGTCCAC 1532
Query 1261 GACCAACAAGCGTATCATATCTGCTAACAGAAGTACAACGCTTAACGATTGTCCATCCTC 1320
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 GACCAGCAAGCGTTTCATATCTGCTAACAGAAGTACAACGCTTAACGATTGTCCATCCTC 1592
Query 1321 CAACTAAGCTCCAACTTTTGCATCAGTATGCACAAGCACTTACAGAACTAGCTCGCGAGA 1380
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1593 CAACTAAACTCCAACTTTTGCATCAGTATGCACAAGCACTTACAGAACTAGCTAGCGAGA 1652
Query 1381 TGGGCAACACAGGGCTGGTAAAGGAATCTTTTGCTGTTACGCTCGTCGTTTTAGCTGTCT 1440
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 TGGGCAATACAGGGCAGGTAAAGGAATCTTTTGCTGTTACGCTCGTCGTTTTAGCTGTCT 1712
Query 1441 GGAGAAAAGCCTTAGAGATATGTGATTCTTGGATGATGTCCGTTGGAGAGGAT-AATGTG 1499
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1713 GGAGAAAAGCCTTAGAGATATGTGATTCTTGGATGATGTCCGTTGGAGAGAATGAA-GTG 1771
Query 1500 AACCCAGATCCAACCACAGCTCCTGAGACTTCAATTCCAGATTTAAATTCACCTGCACCA 1559
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1772 AACCCAGATCCAACCACGGCTCCTGAGACTTCGATTCCAGATTTGAATTCACCTGCACCA 1831
Query 1560 GCTAAAACTTGGGTGACACAAGAGTTTGTTACTGCGTTTAACCAAGCCGAGAATTCATCA 1619
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1832 GCTAAAACGTGGGTGACACAAGAGTTTGTTACCGCGTTAAACCAAGCCGAGAATTTATCA 1891
Query 1620 ACTCAACTAAACGAAACAAGCGCTGCCACTCATATGCCTGACGCCATGGAAACAATATAC 1679
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1892 ACTCAACTAAACGAAACAAGTGCTGCCACTCATATGCCTGACGCCATGGAAACAATATAC 1951
Query 1680 GAGAGGGCACTAGCATATGGCAAGAGTGGTGGGGCTGAAGAATATTTGAGTAACAAAGAA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 GAGAGGGCACTAGCATATGGCAAGAGTGGTGGGGCTGAAGAATATTTGAGTAACAAAGAA 2011
Query 1740 AGTGCAGCAACATTATACAAGAAAGCAATTCTTCTACTCTCCTTTATAACCGAGGAAGCA 1799
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2012 AGTGCAGCAACATTATACAAGAAAGCAATTCTTCTACTCTCCTTTATAATCGAGGAAGCA 2071
Query 1800 GTGACTCTATCTCTAAATCC-TCCTTTCTCACTAACCCCTGACGACAAGAAGCGGATTCT 1858
||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||
Sbjct 2072 GTGACTCTATCTCTAAACCCCTC-TTTCTCATTAACCCCTGACGACAAGAAGCGGATTCT 2130
Query 1859 CTACTACATCTCTAACTTGCAGCATCGTCGGTCTCATCTTTAGCAAAAATCGACCACGGG 1918
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 2131 CTACTACATCTCTAACTTACAGCATCGTCGGTCTCATCTTTAGCGAAAATAGACCGCGGG 2190
Query 1919 CATT 1922
||||
Sbjct 2191 CATT 2194
> AT2G37840.1 | Symbols: | Protein kinase superfamily protein
| chr2:15851803-15856301 FORWARD LENGTH=2631
Length=2631
Score = 161 bits (87), Expect = 2e-38
Identities = 294/390 (75%), Gaps = 30/390 (8%)
Strand=Plus/Plus
Query 273 GTGTTGGAGTATTGTAGTGGAGGTGATCTTG-CTGGGTATAT-CAATCGCCATGGGAAAG 330
||||||||||| || | |||||||| |||| ||| |||| | ||| | ||||||| |
Sbjct 434 GTGTTGGAGTACTGCAAAGGAGGTGA-CTTGTCTGTGTATGTCCAA-AGACATGGGATTG 491
Query 331 TACCTGAAGCTGTTGCTAAACATTTTATG-AGGCAATTGGCTTTAGGGTTACAAGTACTT 389
| ||||||||| |||||| ||||| ||| | ||| || || || |||||||| |||
Sbjct 492 TCCCTGAAGCTACTGCTAAGCATTTCATGCA-GCAGTTAGCGGCCGGCTTACAAGTTCTT 550
Query 390 CAAGAGAAGCATTTTATTCACCGAGATTTAAAGCCTCAGAAT-TTACTTTTATCGTCCAA 448
| || || || ||||||||||||||||||||||||||||| || ||| |||| | ||
Sbjct 551 CGTGACAATAATATTATTCACCGAGATTTAAAGCCTCAGAATCTT-CTTCTATCCACAAA 609
Query 449 GGAAGTT-ACTCCAT-TGCTAAAGATAGGGGATTTTGGGTTTGCAAGGTC-TCTAACA-C 504
||| | | | || | || ||||| | |||||||| |||||||| || | | || |
Sbjct 610 TGAAAATGA-TGCAGAT-CTGAAGATTGCTGATTTTGGATTTGCAAGATCGT-TG-CAAC 665
Query 505 C--GGAGAGCATGGCGGAAACATTT-TGCGGTTCTCCATTGTATATGGCTCCAGAAATTA 561
| || | || | || || || ||| || ||||| |||||||||||||| ||||| || |
Sbjct 666 CTAGGGG-GC-TCGCAGAGAC-TTTATGTGGTTCACCATTGTATATGGCCCCAGAGATCA 722
Query 562 TCCGGAAC-CAA-AAGTATGATGCTAAGGCTGA-CTTATGGAGTGCCGGTGCGATTTTGT 618
| | ||| | | ||||||||||| ||||| || || ||||||| ||||| ||||| |
Sbjct 723 TGC--AACTCCAGAAGTATGATGCAAAGGCAGATCTC-TGGAGTGTTGGTGCTATTTTAT 779
Query 619 TTCAACTTGTTACTGGGA-AACCACCTTTT 647
|||||||||| || || | |||| ||||||
Sbjct 780 TTCAACTTGTGACAGGCAGAACC-CCTTTT 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95180233320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5