BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939278

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62050.1 | Symbols:  | Putative endonuclease or glycosyl hyd...   442    1e-123


> AT3G62050.1 | Symbols:  | Putative endonuclease or glycosyl hydrolase 
| chr3:22978246-22979023 FORWARD LENGTH=612
Length=612

 Score =  442 bits (239),  Expect = 1e-123
 Identities = 353/408 (87%), Gaps = 7/408 (2%)
 Strand=Plus/Plus

Query  2    TCTCTCTATCAATCCGGCAAAACAATGTCTG--CTTTT-CCCGGCGA-TTACGCAGCGGC  57
            |||||| |||||||||| |||||||||||||   |||| |||||||| || |||||||||
Sbjct  36   TCTCTCAATCAATCCGGTAAAACAATGTCTGATATTTTCCCCGGCGACTT-CGCAGCGGC  94

Query  58   TGAGACAGGTATCTTTTGGGACATAGAAGATTGCAAGATTGATGTTGACCTCAATGCTAG  117
            ||||||||| ||||| |||||||||||||||||||||||   || ||| ||||||||| |
Sbjct  95   TGAGACAGGCATCTTCTGGGACATAGAAGATTGCAAGATCCCTGATGATCTCAATGCTGG  154

Query  118  TCAGGTTTTGCAGAACATTAAATTGACCATTTCGAGGGCTGGTCATCATGGAACGGTCTC  177
            | | | |||| |||||||||||| | || ||||||| | |||||||||||| ||||||||
Sbjct  155  TGATGCTTTGAAGAACATTAAATCGGCCCTTTCGAGTGATGGTCATCATGGTACGGTCTC  214

Query  178  AATAAGGGCGTATGGTGATATGACTGGTCATGAGTTTCCCTCTGAGGGAATTAAGCTCAA  237
            | ||||||| |||||||||| ||| |||| ||| ||||| |||||||| |||||||||||
Sbjct  215  AGTAAGGGCTTATGGTGATACGACCGGTCTTGACTTTCCTTCTGAGGGCATTAAGCTCAA  274

Query  238  TCACTTCCCTGCAGGAGAGAGGTACGCGAGACATTCGAAGATGCTTGAAGACATCATTGC  297
            ||||||||| ||||||||||| |||||||||||  | |||||||||||||||||| || |
Sbjct  275  TCACTTCCCCGCAGGAGAGAGATACGCGAGACAGACCAAGATGCTTGAAGACATCGTTTC  334

Query  298  ATGGTCAGCTGAACATCCTCAACCATCAAATTTGATGCTAATC-ATGAAAGACACCTCTC  356
             |||||||||||||||||| |||| |||| |||| | ||||||  ||  ||||||||| |
Sbjct  335  CTGGTCAGCTGAACATCCTGAACCGTCAACTTTGTTCCTAATCGTTG-GAGACACCTCAC  393

Query  357  CAGACTTCATCGAGGTTGTTCAACTTTTGAAATCCAAGAAAAATTACA  404
             ||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  394  GAGACTTCCTCGACGTTGTTCAACTTTTGAAATCCAAGAAAAATTACA  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5