BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939281
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1583 0.0
AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 793 0.0
AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 793 0.0
> AT3G60960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22535706-22538635 FORWARD LENGTH=1513
Length=1513
Score = 1583 bits (857), Expect = 0.0
Identities = 1114/1239 (90%), Gaps = 13/1239 (1%)
Strand=Plus/Plus
Query 15 ATCAGTCATGTCCCCCCTACGCCGCATTATCCGAAATGCGACCGTATCAACGGCGGTTCC 74
|||||||||||||| ||| ||||||||| | |||||| |||||||||||| ||| |||||
Sbjct 17 ATCAGTCATGTCCCTCCTCCGCCGCATTGTACGAAATTCGACCGTATCAAAGGCTGTTCC 76
Query 75 GGTTGCGAAGGCGTTCAAGCCTTACCCACTCGGAAGAGACCCTTCCTCACTCCCCAAGCT 134
||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||
Sbjct 77 GGTTGCGAAGGCGTTCATGCCTTACCCACTAGGAAGAGATCCTTCCTCACTCCCAAAGCT 136
Query 135 TAAGT-GGGTATCGACCAG-TGAGACCGATAACCGCTCAATTTCTCTGCGCTACAGAGTC 192
| | | |||||| | ||| | | | ||||| |||| |||||||||||||||||||||||
Sbjct 137 TGA-TCCGGTATCCATCAGCT-ATATCGATAGCCGCCCAATTTCTCTGCGCTACAGAGTC 194
Query 193 ACGGCGATGATAGAGATGTCTCTTCTCGACAAAGCCGCGAATCTCTCACGACTCGCTGTC 252
| ||| ||||| ||||||||| ||||||| ||||| |||| ||||| || || ||||||
Sbjct 195 AGGGCAATGATCGAGATGTCTAATCTCGACGAAGCCTCGAAGCTCTCGCGGCTAGCTGTC 254
Query 253 TTGGAC-GACTTTCGAGTCGACAGAGACACCGTATTCATCTGCAATTCCATAATTGGCGC 311
||| || || |||| |||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 255 TTGAACGGA-TTTCTAGTCGACAGAGACACCGTCTTCATCTGCAATTCCGTAATCGGCGC 313
Query 312 CATGTGCAGCGCAAAACGGTACGACGATGCCATCTCTCTGTTCAATTAtttttttAACAA 371
|||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 314 CATGTGTAGCGCCAAACGGTACGACGATGCCATCTCTCTGTTCAATTACTTTTTCAACGA 373
Query 372 GTATCAAACTCTGCCAAACACGCTCTCCTGCAATCTCATCATCAAAGCACACTGCAACCA 431
|| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 374 GTCTCAGACTCTTCCAAACACGCTCTCCTGCGATCTCATCATCAAAGCACACTGCGACCA 433
Query 432 ATGTCACGTCGACGACGCTCTTGAGCTCTACCGCCTCATTTTGCTCGACGGACGTTTAGC 491
| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 434 AGGTCACGTCGACGATGCTCTTGAGCTCTACCGTCACATTTTGCTCGACGGACGTGTAGC 493
Query 492 TCCGGGGATCGAGACATACATGTTACTCACGAAAGCCTTGGTTGATGCTGAAAGATTCGA 551
||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 494 TCCAGGGATCGAGACATACATGATACTCGCGAAAGCCTTGGTTGATGCTAAAAGATTCGA 553
Query 552 CGAAGCTTGTGATTTAGTGAGTTGCATGAGCTCTTGTAGTTTCATGGTCTACGACATTTT 611
|||||||||| ||| | ||| | |||||||| ||||||||||||||||||||||||| |
Sbjct 554 TGAAGCTTGTGTTTTGGCGAGATCCATGAGCTGTTGTAGTTTCATGGTCTACGACATTCT 613
Query 612 AATCCGCGGGTTCTTGGATGTAGGGAATTTCGTAAAGGCTAGCCAAATCTTCGAGGAACT 671
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 614 AATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCAAATCTTCGAGGAATT 673
Query 672 GAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACACGGCAATTGCAATCTTTAA 731
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 674 GAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACAAGGCAAATGCAATCTTTAA 733
Query 732 TGTTTCGTTTATGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAGCTATGGAGATTCT 791
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 734 TGTTTCGTTTATGAACTATTGGTTCAAGCAAGGCAAAGATGAGGAAGCTATGGAGATTCT 793
Query 792 CGCAACTCTGGAAGAGGCTCAAGTGTTGAAACCCATTGTCGGAAACAGGGTTTTGGATGT 851
||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||| | ||
Sbjct 794 CGCAAATCTGGAAGATGCTCAAGTGCTGAACCCCATTGTCGGAAACAGGGTTTTGCAAGT 853
Query 852 TCTTGTCTGGCACGGTAAGGATACAGAGGCCTGGGAATTGTTTGAAGAGATGATAGAAAT 911
||| || ||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 854 TCTGGTGAAGCACGGTAAAAAAACAGAGGCCTGGGAATTGTTTGGAGAGATGATAGAAAT 913
Query 912 CTGTGATTCCGAGAC-GATTGACATAATGTCCGACTATTTTAGTGAAAAGACTGTGCCAT 970
|||||||||||||| | |||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 914 TTGTGATTCCGAGACTG-TTGACATAATGTCCGAGTATTTTAGTGAGAAGACTGTACCAT 972
Query 971 TCGAGCGGCTTAGGAAAACGTGTTACACGAATATGATCGTGAGTCTCTGCGAGCATGAAA 1030
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| ||
Sbjct 973 TCGAGCGGCTTAGGAAAACGTGTTATAGGAAGATGATCGTGAGTCTCTGCGAGCATGGAA 1032
Query 1031 AAGTATCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACTGACGTTGACGGAGAGGACT 1090
|||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1033 AAGTGTCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACCGATGTTGACGGAGGGGACT 1092
Query 1091 TGTTCGTAGGGCCTGACGTCTTAACATTCAGAGCAATGATCAATGGATATGTTA-AGGTA 1149
|||| || ||||||||| | |||| ||||||||||||||||||||| |||||| || ||
Sbjct 1093 TGTTGGTGGGGCCTGACCTTTTAATATTCAGAGCAATGATCAATGGTTATGTTTCAG-TA 1151
Query 1150 GGGAGATTCGATGATGCTATCATGACCTTGAACAAGATGCGAGTTTT-ATATATCAGAAA 1208
|||||| | ||||||||||||| |||||||||||||||||| | ||| | || |||||||
Sbjct 1152 GGGAGAGTGGATGATGCTATCAAGACCTTGAACAAGATGCG-GATTTCAAATCTCAGAAA 1210
Query 1209 GCTTGCTATTCATCATGCACCATAAGTTGCATTTG-TGG 1246
||||||||||||||| || |||||||||| ||||| |||
Sbjct 1211 GCTTGCTATTCATCAAGCCCCATAAGTTGGATTTGGTGG 1249
> AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10314118-10317160 FORWARD LENGTH=1308
Length=1308
Score = 793 bits (429), Expect = 0.0
Identities = 774/934 (83%), Gaps = 49/934 (5%)
Strand=Plus/Plus
Query 329 GGTACGACGATGCCATCTCTCTGTTCAATTAtttttttAACAAGTATCAAACTCTGCCAA 388
|||||||||| ||||||||||||||| |||| ||||| ||| ||| ||| ||||| ||||
Sbjct 395 GGTACGACGAAGCCATCTCTCTGTTCGATTACTTTTTCAACGAGTCTCAGACTCTCCCAA 454
Query 389 ACACGCTCTCCTGCAATCTCATCATCAAAGCACACTGCAACCAATGTCA-CGTCGACGAC 447
||| |||||||||||||||||||||||||||||||||| ||||| | || ||||||| ||
Sbjct 455 ACATGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACCAAGG-CAGCGTCGACCAC 513
Query 448 GCTCTTGAGCTCTACCGCCTCATTTTGCTCGACGG-ACGTTTAGCTCCGGGGATCGAGAC 506
||||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||
Sbjct 514 GCTCTTGAGCTCTACCGCCACATTTTGCTCGACGGGA-GTTTAGCTCCAGGGATCGAGAC 572
Query 507 ATACATGTTACTCACGAAAGCCTTGGTTGATGCTGAAAGATTCGACGAAGCTTGTGATTT 566
|||| | |||| |||||||||||||| | |||| ||||||| || |||||||||||| |
Sbjct 573 GTACAGGATACTGACGAAAGCCTTGGTCGGTGCTAAAAGATTAGATGAAGCTTGTGATGT 632
Query 567 AGTGAGTTGCATGAGCT-CT-TGTAGTTTCATGGTCTACGACATTTTAATCCGCGGGTT- 623
|||||| | ||||||| || || | |||| || ||||||||| | || || |||||
Sbjct 633 AGTGAGATCCATGAGCCGCTGTG-A-TTTCGCCGTATACGACATTCTGATTCGAGGGTTT 690
Query 624 CTTGGATGTAGGGAATTTCGTAAAGGCTAGCCAAATCTTCGAGGAACTGAAAGGACTGGA 683
|| |||| ||| || ||||||| |||||||||||||||||||||| ||||||||| | |
Sbjct 691 CT-GGATAAAGGCAAATTCGTAAGGGCTAGCCAAATCTTCGAGGAATTGAAAGGACCGAA 749
Query 684 TAGTAAACTTCCAGGGAGAGAA-TATCACACGGCAATTGCAATCTTTAATGTTTCGTTTA 742
||||||||||||| || || || ||||||| ||| ||||||||||| || ||||||||||
Sbjct 750 TAGTAAACTTCCATGGCGA-AACTATCACAAGGCGATTGCAATCTTCAACGTTTCGTTTA 808
Query 743 TGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAGCTATGGAGATTCTCGCAACTCTGG 802
|| |||| | ||||| ||||||||||| ||||| |||||||||||| |||||||||| |
Sbjct 809 TGGACTACTGGTTCAAGCAAGGCAAAGACGAGGAGGCTATGGAGATTTTCGCAACTCTCG 868
Query 803 AAGAGGCTCAAGTGTTGAA-ACCCATTGTC-GGAAACAGG-GTTTTGGA-TGTTCTTGTC 858
|| | ||| || || | || ||| ||| || |||||| || |||||| | || |||||
Sbjct 869 AACATGCTGAATTGCTCAACACC-ATT-TCCGGAAAC-GGAGTTTTGAAATGC-CTTGTG 924
Query 859 TG-GCACGGTAAGGATA-CAGAGGCCTGGGAATTGTT-TGAAGAGATGATAGAAATCTGT 915
| |||||||| ||| | ||||||||||||||||||| | | || |||||||||||||||
Sbjct 925 -GAGCACGGTA-GGAAAACAGAGGCCTGGGAATTGTTCTTA-GATATGATAGAAATCTGT 981
Query 916 GATTCCGAGACGATTGACATAAT---GTCC--G-AC--TATTTTAGT-GAAAAGACTGTG 966
|||||||||||| ||| |||||| |||| | | | |||| | ||||||||| |
Sbjct 982 GATTCCGAGACGGTTGGCATAATAATGTCCAAGGAGGGTTTTTTCGGCGAAAAGACTATC 1041
Query 967 CCATTCGAGCG-GCTTAGGAA-AACGTGTTACACGAATATGATCGTGAGTCTCTGCGAGC 1024
|| || ||||| | | || || ||||||||| || | ||||||| |||||||||| | |
Sbjct 1042 CCGTTTGAGCGAG-TGAG-AAGAACGTGTTATACCAGGATGATCGCGAGTCTCTGCCAAC 1099
Query 1025 ATGAAAA-A-GTATCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACTGACGTTGACGG 1082
| | ||| | || | || |||||||||||||| ||||| |||||| | |||||||||||
Sbjct 1100 AAGGAAACATGT-TG-GAGGCAGAGAAACTCTTTGCCGACATGTTTGCCGACGTTGACGG 1157
Query 1083 AGAGGACTTGTTCGTAGGGCCTGACGTCTT-AACATTCAGAGCAATGATCAATGGATATG 1141
|| |||||||| | ||| ||||| || || |||||||||||||||||||||||| ||||
Sbjct 1158 TGATGACTTGTTGGCAGGACCTGATGT-TTCAACATTCAGAGCAATGATCAATGGTTATG 1216
Query 1142 TTAAGGTAGGGAGATTCGATGATGCTATCATGACCTTGAACAAGATGCGAGTTTTATA-T 1200
|||||||||||||| ||||||||||||||| |||||||||||||||| || ||| || |
Sbjct 1217 TTAAGGTAGGGAGAGTCGATGATGCTATCAAGACCTTGAACAAGATGA-AGATTTCTAAT 1275
Query 1201 ATCAGAAAGCTTGCTATTCATCATGC-ACCATAA 1233
||||||||||| |||||||||| || || ||||
Sbjct 1276 CTCAGAAAGCTTTCTATTCATCAAGCCAC-ATAA 1308
> AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10338723-10341007 REVERSE LENGTH=1173
Length=1173
Score = 793 bits (429), Expect = 0.0
Identities = 774/934 (83%), Gaps = 49/934 (5%)
Strand=Plus/Plus
Query 329 GGTACGACGATGCCATCTCTCTGTTCAATTAtttttttAACAAGTATCAAACTCTGCCAA 388
|||||||||| ||||||||||||||| |||| ||||| ||| ||| ||| ||||| ||||
Sbjct 260 GGTACGACGAAGCCATCTCTCTGTTCGATTACTTTTTCAACGAGTCTCAGACTCTCCCAA 319
Query 389 ACACGCTCTCCTGCAATCTCATCATCAAAGCACACTGCAACCAATGTCA-CGTCGACGAC 447
||| |||||||||||||||||||||||||||||||||| ||||| | || ||||||| ||
Sbjct 320 ACATGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACCAAGG-CAGCGTCGACCAC 378
Query 448 GCTCTTGAGCTCTACCGCCTCATTTTGCTCGACGG-ACGTTTAGCTCCGGGGATCGAGAC 506
||||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||
Sbjct 379 GCTCTTGAGCTCTACCGCCACATTTTGCTCGACGGGA-GTTTAGCTCCAGGGATCGAGAC 437
Query 507 ATACATGTTACTCACGAAAGCCTTGGTTGATGCTGAAAGATTCGACGAAGCTTGTGATTT 566
|||| | |||| |||||||||||||| | |||| ||||||| || |||||||||||| |
Sbjct 438 GTACAGGATACTGACGAAAGCCTTGGTCGGTGCTAAAAGATTAGATGAAGCTTGTGATGT 497
Query 567 AGTGAGTTGCATGAGCT-CT-TGTAGTTTCATGGTCTACGACATTTTAATCCGCGGGTT- 623
|||||| | ||||||| || || | |||| || ||||||||| | || || |||||
Sbjct 498 AGTGAGATCCATGAGCCGCTGTG-A-TTTCGCCGTATACGACATTCTGATTCGAGGGTTT 555
Query 624 CTTGGATGTAGGGAATTTCGTAAAGGCTAGCCAAATCTTCGAGGAACTGAAAGGACTGGA 683
|| |||| ||| || ||||||| |||||||||||||||||||||| ||||||||| | |
Sbjct 556 CT-GGATAAAGGCAAATTCGTAAGGGCTAGCCAAATCTTCGAGGAATTGAAAGGACCGAA 614
Query 684 TAGTAAACTTCCAGGGAGAGAA-TATCACACGGCAATTGCAATCTTTAATGTTTCGTTTA 742
||||||||||||| || || || ||||||| ||| ||||||||||| || ||||||||||
Sbjct 615 TAGTAAACTTCCATGGCGA-AACTATCACAAGGCGATTGCAATCTTCAACGTTTCGTTTA 673
Query 743 TGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAGCTATGGAGATTCTCGCAACTCTGG 802
|| |||| | ||||| ||||||||||| ||||| |||||||||||| |||||||||| |
Sbjct 674 TGGACTACTGGTTCAAGCAAGGCAAAGACGAGGAGGCTATGGAGATTTTCGCAACTCTCG 733
Query 803 AAGAGGCTCAAGTGTTGAA-ACCCATTGTC-GGAAACAGG-GTTTTGGA-TGTTCTTGTC 858
|| | ||| || || | || ||| ||| || |||||| || |||||| | || |||||
Sbjct 734 AACATGCTGAATTGCTCAACACC-ATT-TCCGGAAAC-GGAGTTTTGAAATGC-CTTGTG 789
Query 859 TG-GCACGGTAAGGATA-CAGAGGCCTGGGAATTGTT-TGAAGAGATGATAGAAATCTGT 915
| |||||||| ||| | ||||||||||||||||||| | | || |||||||||||||||
Sbjct 790 -GAGCACGGTA-GGAAAACAGAGGCCTGGGAATTGTTCTTA-GATATGATAGAAATCTGT 846
Query 916 GATTCCGAGACGATTGACATAAT---GTCC--G-AC--TATTTTAGT-GAAAAGACTGTG 966
|||||||||||| ||| |||||| |||| | | | |||| | ||||||||| |
Sbjct 847 GATTCCGAGACGGTTGGCATAATAATGTCCAAGGAGGGTTTTTTCGGCGAAAAGACTATC 906
Query 967 CCATTCGAGCG-GCTTAGGAA-AACGTGTTACACGAATATGATCGTGAGTCTCTGCGAGC 1024
|| || ||||| | | || || ||||||||| || | ||||||| |||||||||| | |
Sbjct 907 CCGTTTGAGCGAG-TGAG-AAGAACGTGTTATACCAGGATGATCGCGAGTCTCTGCCAAC 964
Query 1025 ATGAAAA-A-GTATCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACTGACGTTGACGG 1082
| | ||| | || | || |||||||||||||| ||||| |||||| | |||||||||||
Sbjct 965 AAGGAAACATGT-TG-GAGGCAGAGAAACTCTTTGCCGACATGTTTGCCGACGTTGACGG 1022
Query 1083 AGAGGACTTGTTCGTAGGGCCTGACGTCTT-AACATTCAGAGCAATGATCAATGGATATG 1141
|| |||||||| | ||| ||||| || || |||||||||||||||||||||||| ||||
Sbjct 1023 TGATGACTTGTTGGCAGGACCTGATGT-TTCAACATTCAGAGCAATGATCAATGGTTATG 1081
Query 1142 TTAAGGTAGGGAGATTCGATGATGCTATCATGACCTTGAACAAGATGCGAGTTTTATA-T 1200
|||||||||||||| ||||||||||||||| |||||||||||||||| || ||| || |
Sbjct 1082 TTAAGGTAGGGAGAGTCGATGATGCTATCAAGACCTTGAACAAGATGA-AGATTTCTAAT 1140
Query 1201 ATCAGAAAGCTTGCTATTCATCATGC-ACCATAA 1233
||||||||||| |||||||||| || || ||||
Sbjct 1141 CTCAGAAAGCTTTCTATTCATCAAGCCAC-ATAA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5