BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939282

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa...   294    5e-79


> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) 
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116

 Score =  294 bits (159),  Expect = 5e-79
 Identities = 273/323 (85%), Gaps = 28/323 (9%)
 Strand=Plus/Plus

Query  167   GATCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTATTGTTAC  226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct  1429  GATCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGAC  1488

Query  227   TATCAACGTCTATGAA---GAGATAAGCATGACGAAAGATAACCCCGAGCTCGGAAATTT  283
             |||||||||||| |||   |||| |||||||||||||||||||| |||||| ||||| ||
Sbjct  1489  TATCAACGTCTACGAAGGCGAGAGAAGCATGACGAAAGATAACCGCGAGCTTGGAAAATT  1548

Query  284   CCAGCTCACCGGCCTTCTTCCTGCACCTAGACGCAAGGAACAGTTTTTCATGGGGGTGCC  343
             | | ||||| ||| |||||||||   |   || |      |||        ||| |||||
Sbjct  1549  CGATCTCACAGGCATTCTTCCTG---C---AC-C------CAG--------GGGAGTGCC  1587

Query  344   ACAGATGGAGGTGACTTTCGAAGTGGACGCAAATGGGATTCTGCAAGTGAACACC-GAAG  402
             |||||| |||||||||||||||||||||||||||||||| ||||| ||||| | | ||||
Sbjct  1588  ACAGATTGAGGTGACTTTCGAAGTGGACGCAAATGGGATCCTGCAGGTGAA-AGCTGAAG  1646

Query  403   ACAAAGTTCCAAAGATGTCACAGTC-ACTTACAATAACGAACGATAAAGGTCGTTTGACA  461
             |||||||| | |||| |||||| || | ||||||||||||||||||||||||||||||||
Sbjct  1647  ACAAAGTTGCTAAGACGTCACAATCGA-TTACAATAACGAACGATAAAGGTCGTTTGACA  1705

Query  462   GGAGAAGAGATTGATGAAATGAT  484
             | |||||||||||| ||||||||
Sbjct  1706  GAAGAAGAGATTGAGGAAATGAT  1728


 Score =  202 bits (109),  Expect = 3e-51
 Identities = 132/143 (92%), Gaps = 2/143 (1%)
 Strand=Plus/Plus

Query  1     CTCGAATCCCAAAAGTTCAGTAGATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACA  60
             |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct  1194  CTCGAATCCCAAAAGTTCAGCAGATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCA  1253

Query  61    AAGGAACTAACCCTGATGAGGTTTTGGCCTAT-ACAACCGCCGTCCAAGGTGGAGTATTA  119
             |||| |||||||||||||||| | ||||||||  |  |||| ||||||||||||||||||
Sbjct  1254  AAGGGACTAACCCTGATGAGGCTGTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTA  1312

Query  120   AGTGGTGAAGGTGGAGAAGAAAC  142
             |||||||||||||||||||||||
Sbjct  1313  AGTGGTGAAGGTGGAGAAGAAAC  1335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25167307647


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5