BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939283

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26090.1 | Symbols:  | Plant self-incompatibility protein S1...   246    1e-64


> AT5G26090.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr5:9109026-9113235 REVERSE LENGTH=1206
Length=1206

 Score =  246 bits (133),  Expect = 1e-64
 Identities = 171/190 (90%), Gaps = 0/190 (0%)
 Strand=Plus/Plus

Query  117  GCGAGATATAAAAAAGATTATAAATCAGAGTATACCGTAGATCCAGACACCGTCACACAT  176
            ||||||||||  ||||||||||||||||||||||  ||| ||||||||||||||||||||
Sbjct  7    GCGAGATATAGGAAAGATTATAAATCAGAGTATAAAGTAAATCCAGACACCGTCACACAT  66

Query  177  ATCGTTGTCTCCAATGAATTGTATGGTCTAAAGAAAGGAAACGCTGGCTTCGTATGCACT  236
            ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct  67   ATCGTTGTCTCCAATGAATTGTACGGTCTAAAGAAAGGAAACGCTGGCTTTGTATGCTCT  126

Query  237  CATGGTCCAAAGGTTTGGCGGAAGAGCAAGCCAGGACAACGGTACAGTTTGCTTCGGTTC  296
            |||||||| |||   |||||| |||||||||||||| | ||||||| ||||||   ||||
Sbjct  127  CATGGTCCCAAGAAGTGGCGGCAGAGCAAGCCAGGAGACCGGTACATTTTGCTGAAGTTC  186

Query  297  AAGCACAACG  306
            ||||||||||
Sbjct  187  AAGCACAACG  196



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27578546703


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5