BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939284

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26100.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   765    0.0  


> AT5G26100.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, 
pollen tube; EXPRESSED DURING: L mature pollen stage, 
M germinated pollen stage; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT3G44170.1); Has 1807 
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria 
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses 
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9117290-9117817 
REVERSE LENGTH=528
Length=528

 Score =  765 bits (414),  Expect = 0.0
 Identities = 493/531 (93%), Gaps = 6/531 (1%)
 Strand=Plus/Plus

Query  22   ATGGAAAACAAGTT-GTCTCTTGGACTCC-TATGTCTATGCCTTGTGATACAATTCACCA  79
            |||||||||||||| || |||||||  || | ||| ||| ||||||| |||||  |||| 
Sbjct  1    ATGGAAAACAAGTTGGT-TCTTGGA-GCCTTGTGTATATACCTTGTGTTACAAGGCACCT  58

Query  80   GCGGCGAGGAGGACAACCCTCTGATAAACCATTATGCTGATTACGAAACGATTCATCCCA  139
            ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct  59   GCGGCGAGGAGAACAACCCTCTGATTAACCATTACGCTGATTACGAAACGATTCATCCTA  118

Query  140  GCGAATACTACAGTTCCGATTTCGAACTCAAAGACGGAACCAATGTGATCTTCGAAGCCA  199
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  GCGAATACTACAGCTCCGATTTCGAACTCAAAGACGGAACCAATGTGATCTTCGAAGCCA  178

Query  200  TCAATGAATTGAAAGGGATCAAGAAACCAAAAGCAGG-TTTCATGTGCAACTATGGCCAA  258
            ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||
Sbjct  179  TCAATGAATTGAAAGGGATCAAGAAACCAAAAGCAGGCTTT-ATGTGCAACTATGGCAAA  237

Query  259  AAACAATGGACAAGGTCTCTTCCGGGAGACGTTTTCTACGCCAAGTTCTTCTTTTACCGG  318
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | 
Sbjct  238  AAACAATGGACAAGGTCTCTTCCGGGAGACATTTTCTACGCCAAGTTCTTCTTTTACAGC  297

Query  319  GTTAATCCACATGCAAAGGTCGTTCAACATTGCCATTTCCGATCGAATTTGGGCTATGTT  378
             |||||||| | ||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct  298  ATTAATCCAAACGCAAAGGTCGTTCAACATTGCCATTTCCGGTCAAATTTGGGTTATGTT  357

Query  379  GACGCATATATCAAGATAACCCCAACGCTCGGACGATCATGTCCCGGTTATAGATGCATT  438
            || || |||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||
Sbjct  358  GATGCCTATATCAAGATAACCCCAGCGCTCGGACGAACATGTCCCGGTTACAGATGCGTT  417

Query  439  TTAGCAATTAGACGTGAAGGCCTCTTGATGAAAGACACTAACGAACTCTTTCCTTGGACA  498
            |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  418  TTAGCGGTTAGACGTGAAGGTCTCTTGATGAAAGACACTAACGAACTCTTTCCTTGGACA  477

Query  499  CCTTGGCCTCGCCGCCACATTCAACCTAAGTTGCCTAAGATCACCAATTGA  549
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478  CCTTGGCCTCGCCGCCACATTCAACCTAAGTTGCCTAAGATCACCAATTGA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5