BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939289
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fac... 1445 0.0
> AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22988547-22990709 REVERSE LENGTH=1805
Length=1805
Score = 1445 bits (782), Expect = 0.0
Identities = 947/1023 (93%), Gaps = 26/1023 (3%)
Strand=Plus/Plus
Query 69 TATAACGAGGACTTCATGAAGAGTATCATCCAtggtggtggtggtggtgCCAACA-AGAA 127
||||||||||| |||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 323 TATAACGAGGATTTCATGAAGAGTATCATCCA---TGGTGGTGGTGGTGCCATCACA-AA 378
Query 128 TCTCGGAGACACGCAGGTTGTTCCACAAAGTCATGTTGTTCCT-CCTCATGAAACAGAA- 185
|||||| ||||||||||||||||||||||||||||||| | || || ||||||||| ||
Sbjct 379 TCTCGGGGACACGCAGGTTGTTCCACAAAGTCATGTTGCTGCTGCC-CATGAAACA-AAC 436
Query 186 ATGTTGGAAAGCAATAGACATGTTGACGATTCAACTTTGATTGAGACTTTGAAAGCTTCT 245
|||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 437 ATGTTGGAAAGCAATAAACATGTTGACGATT---C------TGAGACTTTGAAAGCTTCT 487
Query 246 TCATCAAAGAGGATGATGGTTGATTATGATAACCGAATGAAGGTCAAGTTTATACCTCCT 305
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||
Sbjct 488 TCATCAAAGAGGATGATGGTTGATTATCATAACCGAAAGAAGATCAAGTTTATACCTCCT 547
Query 306 GATGAGCAATCTGTGGTTGCTGAAAGGATGGTT-GAATCGGGCTTTAACACTTCCTCCGC 364
||||||||||| ||||||||||| ||| | ||| ||| ||||||| ||||||||||||
Sbjct 548 GATGAGCAATCCGTGGTTGCTGATAGG-TCGTTCAAATTGGGCTTTGACACTTCCTCCGT 606
Query 365 AGGTTTTACTGAAGACAGTGAAGGATCGATGTATCTGAGCAGCAGTCTAGATGACGAGTC 424
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 607 AGGTTTCACTGAAGACAGTGAAGGATCGATGTATCTAAGCAGTAGTCTAGATGACGAGTC 666
Query 425 AGATGATGCGAGGCCACAAGTTCCTGCAAGAACAAGAAAAGCTTTGGTCAAAAGAAAACG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGATGATGCGAGGCCACAAGTTCCTGCAAGAACAAGAAAAGCTTTGGTCAAAAGAAAACG 726
Query 485 AAATGCAGAAGC-TAATAATTCACCTGAAAGAAAGCAAAGAAGA-GACATCAACAAGAAA 542
|||||||||||| || |||||||||||| ||||| ||||||| | || ||||||||||||
Sbjct 727 AAATGCAGAAGCGTA-TAATTCACCTGAGAGAAATCAAAGAA-ATGATATCAACAAGAAA 784
Query 543 ATGCGTACTTTGCAGGATCTACTACCTAATTCCCACAAGGATGACAACGAATCGATGTTG 602
|||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 785 ATGCGTACTTTGCAAAATCTACTACCTAACTCTCACAAGGACGACAACGAATCGATGTTG 844
Query 603 GATGAAGCAATCATTTATATGAAAAACCTAAAACTTCAAGTTCAGATGATGACGATGGGT 662
||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 845 GATGAAGCAATCAATTATATGACAAACCTTCAACTTCAAGTTCAGATGATGACGATGGGT 904
Query 663 AACAGATTTGTTACACCATCAATGATGTTGCCTTTGGGGCTGCATTACTCTCAGATGGGT 722
||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||
Sbjct 905 AACAGATTTGTTACACCATCAATGATGATGCCTTTGGGGCCGAACTACTCTCAGATGGGT 964
Query 723 CTAGCAATGGGTATGGGAATGCAAATGGACGCACAACAGTTTCTGCCTGCACATGTTCTA 782
|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 965 CTAGCAATGGGTGTGGGAATGCAAATGGGCGAACAACAGTTTCTGCCTGCACATGTTCTA 1024
Query 783 GGAGCTGGCTTGCCTGGGATTAATGATTCAGCAGATATGCTAAGGTTTCTTAGCCATCCT 842
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1025 GGAGCTGGCTTGCCTGGGATTAATGATTCAGCAGATATGCTAAGGTTTCTTAACCATCCT 1084
Query 843 GGACTAATGCCAATGCAAAACTCTGCACCTTTCACTCCAACGGAAGATTGTTCCCCACAA 902
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1085 GGACTAATGCCAATGCAAAACTCTGCACCTTTCATTCCAACGGAAAATTGTTCCCCACAA 1144
Query 903 TCTGTCCCTCCATCGTGCGCTGCTTTCCCTAACCAAATACCAAACCCCACCTCTTTGTCA 962
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1145 TCTGTCCCTCCATCGTGCGCTGCTTTCCCTAACCAAATACCAAATCCCAACTCTTTGTCA 1204
Query 963 AATTTAGATGGTGCATCTCCTTACACAAGAAATCAAGGAACATTAACAGATGAAGGAATC 1022
||||||||||||||| | | |||||||||||||||||||| | ||||||||||||||||
Sbjct 1205 AATTTAGATGGTGCAAC-C-TTACACAAGAAATCAAGGAAAACTAACAGATGAAGGAATT 1262
Query 1023 CTCCCTGGTAAAATTCTGGAAACCCGTGAGCAGATGAAATAAACAGTGATGATTGTTACA 1082
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1263 CTCCCTGGTAAAAATCTGGAAACCCGTGAGCAGATGAAGTAAACAGTGATGATTGTTACC 1322
Query 1083 TGC 1085
|||
Sbjct 1323 TGC 1325
Score = 111 bits (60), Expect = 1e-23
Identities = 62/63 (98%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1 GGTTAAACGATCAAGAGTATATGGAGCTTGTGTTTGAGAATGGCCAGATTCTTGCAAAGG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GGTTAAGCGATCAAGAGTATATGGAGCTTGTGTTTGAGAATGGCCAGATTCTTGCAAAGG 254
Query 61 GCC 63
|||
Sbjct 255 GCC 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5