BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939290
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1635 0.0
AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 835 0.0
AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 835 0.0
> AT3G60960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22535706-22538635 FORWARD LENGTH=1513
Length=1513
Score = 1635 bits (885), Expect = 0.0
Identities = 1124/1237 (91%), Gaps = 25/1237 (2%)
Strand=Plus/Plus
Query 15 ATCAGTCATGTCCTTCCTACGCCGCATTGTCCGAAATTCGACCGTATCAAAGGCTGTTCC 74
||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 17 ATCAGTCATGTCCCTCCTCCGCCGCATTGTACGAAATTCGACCGTATCAAAGGCTGTTCC 76
Query 75 GGTTGCGAAGGCGTTCATGCCTTACCCACTCGGAAGAGACCCTTCCTCACTCCCCAAGCT 134
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 77 GGTTGCGAAGGCGTTCATGCCTTACCCACTAGGAAGAGATCCTTCCTCACTCCCAAAGCT 136
Query 135 TGAGTG-GGTCTCGATCAGGAATATCGAT-GACCGCCCAATTTCTCTGGGCTACAGAGTC 192
||| | ||| || ||||| |||||||| | |||||||||||||||| |||||||||||
Sbjct 137 TGA-TCCGGTATCCATCAGCTATATCGATAG-CCGCCCAATTTCTCTGCGCTACAGAGTC 194
Query 193 ACGGCAATGATCGAGATGTC-AATGCTCGACAAAGCCTCGGATCTCTCGCGCCTCGCTGT 251
| |||||||||||||||||| ||| |||||| |||||||| | |||||||| || |||||
Sbjct 195 AGGGCAATGATCGAGATGTCTAAT-CTCGACGAAGCCTCGAAGCTCTCGCGGCTAGCTGT 253
Query 252 CCTGGACAAATTTCGAGTAGACAGAGACACCGTATTCATCTGCAATTCCATAATTGGCGC 311
| || || ||||| ||| |||||||||||||| ||||||||||||||| |||| |||||
Sbjct 254 CTTGAACGGATTTCTAGTCGACAGAGACACCGTCTTCATCTGCAATTCCGTAATCGGCGC 313
Query 312 CATGTGCAGCGCAAAACGGTACGACGATGCCATCTGTCTGTTCAATTACTTTTTCAACGA 371
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 314 CATGTGTAGCGCCAAACGGTACGACGATGCCATCTCTCTGTTCAATTACTTTTTCAACGA 373
Query 372 GTCTCA-AGCTCTCCCAAACACGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACC 430
|||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 374 GTCTCAGA-CTCTTCCAAACACGCTCTCCTGCGATCTCATCATCAAAGCACACTGCGACC 432
Query 431 AAGGTCACGTCGACCACGCTCTTCAGCTCTACCGCCACATTTTGCTCGACGGACGTTTAG 490
|||||||||||||| | |||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 433 AAGGTCACGTCGACGATGCTCTTGAGCTCTACCGTCACATTTTGCTCGACGGACGTGTAG 492
Query 491 CTCCGGGGATGGAGACATACATGATACTCACGAAAGCCTTGGTTGATGCTGAACGATTCG 550
|||| ||||| |||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 493 CTCCAGGGATCGAGACATACATGATACTCGCGAAAGCCTTGGTTGATGCTAAAAGATTCG 552
Query 551 ATGAAGCTTGTGATTTAGTGGGATCCATGAGCTCTTGTAGTTTCATGGTCTACGACATTC 610
|||||||||||| ||| | | |||||||||||| ||||||||||||||||||||||||||
Sbjct 553 ATGAAGCTTGTGTTTTGGCGAGATCCATGAGCTGTTGTAGTTTCATGGTCTACGACATTC 612
Query 611 TGATTCGAGGGTTCTTGTATGTAGGGGATTTCGTAAAGGCTAGCCAAATCTTCAAGGAAT 670
| ||||| ||||||||| || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 613 TAATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCAAATCTTCGAGGAAT 672
Query 671 TG---G-A-T--A--GTAAACTTCCATGTAGAGAATATCACAAGGCAATTGCAATCTTTA 721
|| | | | | ||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 673 TGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACAAGGCAAATGCAATCTTTA 732
Query 722 ATGTTTCGTTTATGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAGCTATGGAGATTC 781
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 733 ATGTTTCGTTTATGAACTATTGGTTCAAGCAAGGCAAAGATGAGGAAGCTATGGAGATTC 792
Query 782 TCGCAACTCTGGAAGAGGCTCAAGTGTTGAAACCCATTGTCGGAAATAGGGTTTTGCAAG 841
|||||| ||||||||| ||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 793 TCGCAAATCTGGAAGATGCTCAAGTGCTGAACCCCATTGTCGGAAACAGGGTTTTGCAAG 852
Query 842 TTCTTGTGGAGCACGGTAAGAAAACAGAGGCCTGGGAATTGTTTGAAGAGATGATAGAAA 901
|||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 853 TTCTGGTGAAGCACGGTAAAAAAACAGAGGCCTGGGAATTGTTTGGAGAGATGATAGAAA 912
Query 902 TCTGTGATTCCGAGAC-GATTGACATAATGTCCGACTATTTTAGTGAAAAGACTGTGCCA 960
| |||||||||||||| | |||||||||||||||| ||||||||||| |||||||| |||
Sbjct 913 TTTGTGATTCCGAGACTG-TTGACATAATGTCCGAGTATTTTAGTGAGAAGACTGTACCA 971
Query 961 TTCGAGCGGCTTAGGAAAACGTGTTATAGGAATATGATCGTGAGTCTCTGCGAGCATGGA 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 972 TTCGAGCGGCTTAGGAAAACGTGTTATAGGAAGATGATCGTGAGTCTCTGCGAGCATGGA 1031
Query 1021 AAAGTGTCAGACGCAGAGAAACTCTTCGCTGAGATGTTTACCGACGTTGACGGAGAGGG- 1079
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 1032 AAAGTGTCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACCGATGTTGACGGAG-GGGA 1090
Query 1080 CTTGTTCGTGGGGCCTGACGTCTTAACATTCAGAGCAATGATCAATGGTTATGTTA-AGG 1138
|||||| |||||||||||| | |||| |||||||||||||||||||||||||||| ||
Sbjct 1091 CTTGTTGGTGGGGCCTGACCTTTTAATATTCAGAGCAATGATCAATGGTTATGTTTCAG- 1149
Query 1139 TAGGGAGAGTCGATGATGCTATCAAGACCTTGAACAAGATGCGAGTTTT-AAATATCAGA 1197
|||||||||| |||||||||||||||||||||||||||||||| | ||| |||| |||||
Sbjct 1150 TAGGGAGAGTGGATGATGCTATCAAGACCTTGAACAAGATGCG-GATTTCAAATCTCAGA 1208
Query 1198 AAGCTTGCTATTCATTGTGCACCATAAGTTGCATTTG 1234
||||||||||||||| || |||||||||| |||||
Sbjct 1209 AAGCTTGCTATTCATCAAGCCCCATAAGTTGGATTTG 1245
> AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10314118-10317160 FORWARD LENGTH=1308
Length=1308
Score = 835 bits (452), Expect = 0.0
Identities = 773/920 (84%), Gaps = 54/920 (6%)
Strand=Plus/Plus
Query 329 GGTACGACGATGCCATCTGTCTGTTCAATTACTTTTTCAACGAGTCTCAAG-CTCTCCCA 387
|||||||||| ||||||| ||||||| ||||||||||||||||||||| || ||||||||
Sbjct 395 GGTACGACGAAGCCATCTCTCTGTTCGATTACTTTTTCAACGAGTCTC-AGACTCTCCCA 453
Query 388 AACACGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACCAAGGTCA-CGTCGACCA 446
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 454 AACATGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACCAAGG-CAGCGTCGACCA 512
Query 447 CGCTCTTCAGCTCTACCGCCACATTTTGCTCGACGG-ACGTTTAGCTCCGGGGATGGAGA 505
||||||| |||||||||||||||||||||||||||| | |||||||||| ||||| ||||
Sbjct 513 CGCTCTTGAGCTCTACCGCCACATTTTGCTCGACGGGA-GTTTAGCTCCAGGGATCGAGA 571
Query 506 CATACATGATACTCACGAAAGCCTTGGTTGATGCTGAACGATTCGATGAAGCTTGTGATT 565
| |||| |||||| |||||||||||||| | |||| || |||| |||||||||||||||
Sbjct 572 CGTACAGGATACTGACGAAAGCCTTGGTCGGTGCTAAAAGATTAGATGAAGCTTGTGATG 631
Query 566 TAGTGGGATCCATGAGCT-CT-TGTAGTTTCATGGTCTACGACATTCTGATTCGAGGGTT 623
||||| ||||||||||| || || | |||| || |||||||||||||||||||||||
Sbjct 632 TAGTGAGATCCATGAGCCGCTGTG-A-TTTCGCCGTATACGACATTCTGATTCGAGGGTT 689
Query 624 -CTTGTATGTAGGGGATTTCGTAAAGGCTAGCCAAATCTTCAAGGAATTG---G-A---- 674
|| | || ||| | ||||||| |||||||||||||||| |||||||| | |
Sbjct 690 TCTGG-ATAAAGGCAAATTCGTAAGGGCTAGCCAAATCTTCGAGGAATTGAAAGGACCGA 748
Query 675 -TAGTAAACTTCCATGTAGAGAA-TATCACAAGGCAATTGCAATCTTTAATGTTTCGTTT 732
||||||||||||||| || || ||||||||||| ||||||||||| || |||||||||
Sbjct 749 ATAGTAAACTTCCATGGCGA-AACTATCACAAGGCGATTGCAATCTTCAACGTTTCGTTT 807
Query 733 ATGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAGCTATGGAGATTCTCGCAACTCTG 792
||| |||| | ||||| ||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 808 ATGGACTACTGGTTCAAGCAAGGCAAAGACGAGGAGGCTATGGAGATTTTCGCAACTCTC 867
Query 793 GAAGAGGCTCAAGTGTTGAA-ACCCATTGTC-GGAAATAGG-GTTTTGCAAGTTC-TTGT 848
||| | ||| || || | || ||| ||| || ||||| || |||||| || | | ||||
Sbjct 868 GAACATGCTGAATTGCTCAACACC-ATT-TCCGGAAAC-GGAGTTTTGAAA-TGCCTTGT 923
Query 849 GGAGCACGGTAAGAAAACAGAGGCCTGGGAATTGTT-TGAAGAGATGATAGAAATCTGTG 907
||||||||||| |||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct 924 GGAGCACGGTAGGAAAACAGAGGCCTGGGAATTGTTCTTA-GATATGATAGAAATCTGTG 982
Query 908 ATTCCGAGACGATTGACATAAT---GTCC--G-AC--TATTTTAGT-GAAAAGACTGTGC 958
||||||||||| ||| |||||| |||| | | | |||| | ||||||||| | |
Sbjct 983 ATTCCGAGACGGTTGGCATAATAATGTCCAAGGAGGGTTTTTTCGGCGAAAAGACTATCC 1042
Query 959 CATTCGAGCG-GCTTAGGAA-AACGTGTTATAGGAATATGATCGTGAGTCTCTGCGAGCA 1016
| || ||||| | | || || ||||||||||| | ||||||| |||||||||| | ||
Sbjct 1043 CGTTTGAGCGAG-TGAG-AAGAACGTGTTATACCAGGATGATCGCGAGTCTCTGCCAACA 1100
Query 1017 TGGAAA-AGTGTCAGACGCAGAGAAACTCTTCGCTGAGATGTTTACCGACGTTGACGGAG 1075
||||| | ||| || |||||||||||||| || || |||||| ||||||||||||| |
Sbjct 1101 AGGAAACA-TGTTGGAGGCAGAGAAACTCTTTGCCGACATGTTTGCCGACGTTGACGGTG 1159
Query 1076 AGGGCTTGTTCGTGGGGCCTGACGTCTT-AACATTCAGAGCAATGATCAATGGTTATGTT 1134
| | |||||| | || ||||| || || |||||||||||||||||||||||||||||||
Sbjct 1160 ATGACTTGTTGGCAGGACCTGATGT-TTCAACATTCAGAGCAATGATCAATGGTTATGTT 1218
Query 1135 AAGGTAGGGAGAGTCGATGATGCTATCAAGACCTTGAACAAGATGC-GAGTTT-TAAATA 1192
||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
Sbjct 1219 AAGGTAGGGAGAGTCGATGATGCTATCAAGACCTTGAACAAGATGAAGA-TTTCTAA-TC 1276
Query 1193 TCAGAAAGCTTGCTATTCAT 1212
||||||||||| ||||||||
Sbjct 1277 TCAGAAAGCTTTCTATTCAT 1296
> AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10338723-10341007 REVERSE LENGTH=1173
Length=1173
Score = 835 bits (452), Expect = 0.0
Identities = 773/920 (84%), Gaps = 54/920 (6%)
Strand=Plus/Plus
Query 329 GGTACGACGATGCCATCTGTCTGTTCAATTACTTTTTCAACGAGTCTCAAG-CTCTCCCA 387
|||||||||| ||||||| ||||||| ||||||||||||||||||||| || ||||||||
Sbjct 260 GGTACGACGAAGCCATCTCTCTGTTCGATTACTTTTTCAACGAGTCTC-AGACTCTCCCA 318
Query 388 AACACGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACCAAGGTCA-CGTCGACCA 446
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 319 AACATGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACCAAGG-CAGCGTCGACCA 377
Query 447 CGCTCTTCAGCTCTACCGCCACATTTTGCTCGACGG-ACGTTTAGCTCCGGGGATGGAGA 505
||||||| |||||||||||||||||||||||||||| | |||||||||| ||||| ||||
Sbjct 378 CGCTCTTGAGCTCTACCGCCACATTTTGCTCGACGGGA-GTTTAGCTCCAGGGATCGAGA 436
Query 506 CATACATGATACTCACGAAAGCCTTGGTTGATGCTGAACGATTCGATGAAGCTTGTGATT 565
| |||| |||||| |||||||||||||| | |||| || |||| |||||||||||||||
Sbjct 437 CGTACAGGATACTGACGAAAGCCTTGGTCGGTGCTAAAAGATTAGATGAAGCTTGTGATG 496
Query 566 TAGTGGGATCCATGAGCT-CT-TGTAGTTTCATGGTCTACGACATTCTGATTCGAGGGTT 623
||||| ||||||||||| || || | |||| || |||||||||||||||||||||||
Sbjct 497 TAGTGAGATCCATGAGCCGCTGTG-A-TTTCGCCGTATACGACATTCTGATTCGAGGGTT 554
Query 624 -CTTGTATGTAGGGGATTTCGTAAAGGCTAGCCAAATCTTCAAGGAATTG---G-A---- 674
|| | || ||| | ||||||| |||||||||||||||| |||||||| | |
Sbjct 555 TCTGG-ATAAAGGCAAATTCGTAAGGGCTAGCCAAATCTTCGAGGAATTGAAAGGACCGA 613
Query 675 -TAGTAAACTTCCATGTAGAGAA-TATCACAAGGCAATTGCAATCTTTAATGTTTCGTTT 732
||||||||||||||| || || ||||||||||| ||||||||||| || |||||||||
Sbjct 614 ATAGTAAACTTCCATGGCGA-AACTATCACAAGGCGATTGCAATCTTCAACGTTTCGTTT 672
Query 733 ATGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAGCTATGGAGATTCTCGCAACTCTG 792
||| |||| | ||||| ||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 673 ATGGACTACTGGTTCAAGCAAGGCAAAGACGAGGAGGCTATGGAGATTTTCGCAACTCTC 732
Query 793 GAAGAGGCTCAAGTGTTGAA-ACCCATTGTC-GGAAATAGG-GTTTTGCAAGTTC-TTGT 848
||| | ||| || || | || ||| ||| || ||||| || |||||| || | | ||||
Sbjct 733 GAACATGCTGAATTGCTCAACACC-ATT-TCCGGAAAC-GGAGTTTTGAAA-TGCCTTGT 788
Query 849 GGAGCACGGTAAGAAAACAGAGGCCTGGGAATTGTT-TGAAGAGATGATAGAAATCTGTG 907
||||||||||| |||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct 789 GGAGCACGGTAGGAAAACAGAGGCCTGGGAATTGTTCTTA-GATATGATAGAAATCTGTG 847
Query 908 ATTCCGAGACGATTGACATAAT---GTCC--G-AC--TATTTTAGT-GAAAAGACTGTGC 958
||||||||||| ||| |||||| |||| | | | |||| | ||||||||| | |
Sbjct 848 ATTCCGAGACGGTTGGCATAATAATGTCCAAGGAGGGTTTTTTCGGCGAAAAGACTATCC 907
Query 959 CATTCGAGCG-GCTTAGGAA-AACGTGTTATAGGAATATGATCGTGAGTCTCTGCGAGCA 1016
| || ||||| | | || || ||||||||||| | ||||||| |||||||||| | ||
Sbjct 908 CGTTTGAGCGAG-TGAG-AAGAACGTGTTATACCAGGATGATCGCGAGTCTCTGCCAACA 965
Query 1017 TGGAAA-AGTGTCAGACGCAGAGAAACTCTTCGCTGAGATGTTTACCGACGTTGACGGAG 1075
||||| | ||| || |||||||||||||| || || |||||| ||||||||||||| |
Sbjct 966 AGGAAACA-TGTTGGAGGCAGAGAAACTCTTTGCCGACATGTTTGCCGACGTTGACGGTG 1024
Query 1076 AGGGCTTGTTCGTGGGGCCTGACGTCTT-AACATTCAGAGCAATGATCAATGGTTATGTT 1134
| | |||||| | || ||||| || || |||||||||||||||||||||||||||||||
Sbjct 1025 ATGACTTGTTGGCAGGACCTGATGT-TTCAACATTCAGAGCAATGATCAATGGTTATGTT 1083
Query 1135 AAGGTAGGGAGAGTCGATGATGCTATCAAGACCTTGAACAAGATGC-GAGTTT-TAAATA 1192
||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
Sbjct 1084 AAGGTAGGGAGAGTCGATGATGCTATCAAGACCTTGAACAAGATGAAGA-TTTCTAA-TC 1141
Query 1193 TCAGAAAGCTTGCTATTCAT 1212
||||||||||| ||||||||
Sbjct 1142 TCAGAAAGCTTTCTATTCAT 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5