BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939293
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62140.1 | Symbols: | CONTAINS InterPro DOMAIN/s: NEFA-inte... 1072 0.0
> AT3G62140.1 | Symbols: | CONTAINS InterPro DOMAIN/s: NEFA-interacting
nuclear protein NIP30, N-terminal (InterPro:IPR019331);
Has 398 Blast hits to 395 proteins in 139 species: Archae
- 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36;
Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
| chr3:23007083-23008749 FORWARD LENGTH=962
Length=962
Score = 1072 bits (580), Expect = 0.0
Identities = 651/686 (95%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 1 TTGTTGCGTAGAGGAAGAAGATGGCTGATGAGACAGAGAAACCTATTAGGTTACTCAATT 60
|||| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 175 TTGTGGAGTAGAGGAAGAAGATGGTTGATGAGACAGAAAAACCTATTAGGTTACTCAATT 234
Query 61 TCGTCTCGGAGGAACAGTTAGATGAATCGAAGAAAGAAAGAGGTGAAAGAGTTGAAGATG 120
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 235 TCGTCTCCGAGGAACAGTTAGATGAATCGAAGAAAGAAAGAGGAGAAAGAGTTGAAGATG 294
Query 121 GAACATTCCAGAGAGACAGGGCTCTCTACGAGATTTTGAAAGAGAACAAAGACAAGAAAG 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 295 GAACATTCCAGAGGGACAGGGCTCTCTACGAGATTTTGAAAGAGAACAAAGACAAGAAGG 354
Query 181 ACGCTGAGTTTAATGAACGATTCAAGCATAGACCACCCAAAGCTCTGGATGAAGATGAGA 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 355 ACGCTGAGTTTAATGAACGATTCAAGCATAGGCCACCCAAAGCTCTGGATGAAGATGAGA 414
Query 241 CCGAGTTTCTTGATAAGCTGGCAATGTCAAAGAGGGAATATGAACGACAATTGGCAAATG 300
|||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 415 CCGAGTTTCTTGATAAACTGGAAATGTCAAAGAGGGAATATGAACGTCAATTGGCAAATG 474
Query 301 AAGAGGAAGAACAGCTTCGTAGTTTCCAGGCAGCGGTTGCAGCACGATCAGCAATCCTTC 360
|||| || ||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 475 AAGAAGATGAACAGCTTCGTAATTTCCAGGCAGCGGTTGCAGCACGATCTGCAATCCTTC 534
Query 361 ACGAACCAAAGGAAGCGGCACCT-CCACCACCAGCTCCAATCACCAAGGAACAAAAACCA 419
|||||||||||||||| |||| | ||||||||||| ||| ||||||||||||||||||||
Sbjct 535 ACGAACCAAAGGAAGCAGCAC-TGCCACCACCAGCGCCAGTCACCAAGGAACAAAAACCA 593
Query 420 ACCGGGAAGAGAAATACTGTGACTCGTCCATTTAAAGCGATCATAAAAGTCAAGCCACAA 479
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ATCGGGAAGAGAAATCCTGCGACTCGTCCATTTAAAGCGATCATAAAAGTCAAGCCACAA 653
Query 480 CCGAAGAAGGCTAAAGCGACAGAGAAAGAAGAGAAAGAGATCCCGGGGAATGGAAAACCG 539
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 654 CCCAAGAAGGCTAAAGCAACAGAGAAAGAAGAGAAAGAGATCCCAGGGAATGGAAAACCG 713
Query 540 GCCAGCCAAATCGACCCGACTTCTTTAGATTCCGTAAAAGGCAATGTCACAGGTAAAACT 599
|||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 714 GCCAGCCATATCGACCAGGCTTCTTTAGATTCTGTAAAAGGCAATGTCACAGGTAAAACT 773
Query 600 ACTGAAGCTCTGCAAACAGGTTTAGGCTTAGTCTCATATAGTGATGAAAGTGAAGACGAT 659
||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 774 ACTGAAGGTCTGCAAACTGGTTTAGCCTTAGTCTCATATAGTGATGAAAGTGAAGACGAT 833
Query 660 GATTAACATTTTGTGTTACTGACTCA 685
|||||| |||||||||||||||||||
Sbjct 834 GATTAATATTTTGTGTTACTGACTCA 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5